Public Experiments Overview

This page provides an overview of all the public data in GeneProf, there's a lot of genome-scale ready-analyzed RNA-seq and ChIP-seq data for you to explore!

Missing a particular dataset? Please feel free to request its addition to the database (login required!) or would you perhaps consider adding it yourself?

Alternatively, have a look at the public genome browser tracks overview.

Jump to experiments for reference:

Experiments for Ensembl 58 Mouse Genes, NCBIM37 Assembly (gpDS_pub_mm_ens58_ncbim37)

Accession Experiment Type(s) SRA Link Citation(s) Tissue(s) Cell Type(s) Cell Line(s) Main Result Dataset(s)
gpXP_000012 Chen2008 Data: Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
  • Transcription Factor Binding
SRP000217
  • [Data] Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133 (2008). PubMed:
  • in vitro
  • embryonic stem cell
  • E14
FEATURES gpDS_11_12_122_1 Regulated Genes Export Data
FEATURES gpDS_11_12_123_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_12_107_2 Chen2008 Data: Nanog Export Data
GENOMIC_REGIONS gpDS_11_12_106_2 Chen2008 Data: Zfx Export Data
GENOMIC_REGIONS gpDS_11_12_111_2 Chen2008 Data: Sox2 Export Data
GENOMIC_REGIONS gpDS_11_12_102_2 Chen2008 Data: Tcfcp2l1 Export Data
GENOMIC_REGIONS gpDS_11_12_110_2 Chen2008 Data: Ctcf Export Data
GENOMIC_REGIONS gpDS_11_12_114_2 Chen2008 Data: Klf4 Export Data
GENOMIC_REGIONS gpDS_11_12_103_2 Chen2008 Data: Ep300 Export Data
GENOMIC_REGIONS gpDS_11_12_113_2 Chen2008 Data: Pou5f1 Export Data
GENOMIC_REGIONS gpDS_11_12_108_2 Chen2008 Data: Suz12 Export Data
GENOMIC_REGIONS gpDS_11_12_104_2 Chen2008 Data: E2f1 Export Data
GENOMIC_REGIONS gpDS_11_12_115_2 Chen2008 Data: Stat3 Export Data
GENOMIC_REGIONS gpDS_11_12_105_2 Chen2008 Data: Mycn Export Data
GENOMIC_REGIONS gpDS_11_12_112_2 Chen2008 Data: Smad1 Export Data
GENOMIC_REGIONS gpDS_11_12_109_2 Chen2008 Data: Esrrb Export Data
GENOMIC_REGIONS gpDS_11_12_101_2 Chen2008 Data: Myc Export Data
GENOMIC_REGIONS gpDS_11_12_116_2 Chen2008 Data: GFP Export Data
gpXP_000022 Ensembl 58 Mouse Genes, NCBIM37 Assembly
  • Reference Creation
N/A
REFERENCE gpDS_pub_mm_ens58_ncbim37 Ensembl 58 Mouse Genes, NCBIM37 Assembly Export Data
gpXP_000023 Mortazavi2008 Data: Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq
  • Expression
SRP000198
  • [Data] Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5 (2008). PubMed:
  • brain
  • liver
  • skeletal muscle
  • liver cell
  • neural cell
  • skeletal muscle cell
FEATURES gpDS_11_23_43_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_11_23_32_2 Mortazavi2008 Data: liver, spiked 1 Export Data
GENOMIC_REGIONS gpDS_11_23_36_2 Mortazavi2008 Data: liver, spiked-in.2 Export Data
GENOMIC_REGIONS gpDS_11_23_38_2 Mortazavi2008 Data: liver, spiked 3 Export Data
GENOMIC_REGIONS gpDS_11_23_28_2 Mortazavi2008 Data: sk. muscle, spiked 1 Export Data
GENOMIC_REGIONS gpDS_11_23_37_2 Mortazavi2008 Data: sk. muscle, spiked 2 Export Data
GENOMIC_REGIONS gpDS_11_23_34_2 Mortazavi2008 Data: liver.1 Export Data
GENOMIC_REGIONS gpDS_11_23_35_2 Mortazavi2008 Data: liver.2 Export Data
GENOMIC_REGIONS gpDS_11_23_29_2 Mortazavi2008 Data: brain, spiked 1 Export Data
GENOMIC_REGIONS gpDS_11_23_31_2 Mortazavi2008 Data: brain, spiked 2 Export Data
GENOMIC_REGIONS gpDS_11_23_30_2 Mortazavi2008 Data: skeletal muscle Export Data
GENOMIC_REGIONS gpDS_11_23_33_2 Mortazavi2008 Data: brain.1 Export Data
GENOMIC_REGIONS gpDS_11_23_39_2 Mortazavi2008 Data: brain.2 Export Data
gpXP_000027 Kagey2010 Data: Control of Embryonic Stem Cell State by Mediator and Cohesin
  • Transcription Factor Binding
SRP002778
  • [Data] Mediator and cohesin connect gene expression and chromatin architecture. Nature 467 (2010). PubMed:
  • embryonic fibroblast
  • embryonic stem cell
FEATURES gpDS_11_27_52_1 Regulated Genes Export Data
FEATURES gpDS_11_27_53_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_27_40_2 Kagey2010 Data: Smc3 (ES) Export Data
GENOMIC_REGIONS gpDS_11_27_39_2 Kagey2010 Data: Med1 (MEF) Export Data
GENOMIC_REGIONS gpDS_11_27_37_2 Kagey2010 Data: Med1 (ES) Export Data
GENOMIC_REGIONS gpDS_11_27_42_2 Kagey2010 Data: CTCF (MEF) Export Data
GENOMIC_REGIONS gpDS_11_27_41_2 Kagey2010 Data: Smc1 (ES) Export Data
GENOMIC_REGIONS gpDS_11_27_45_2 Kagey2010 Data: Nipbl (ES) Export Data
GENOMIC_REGIONS gpDS_11_27_38_2 Kagey2010 Data: Med12 (ES) Export Data
GENOMIC_REGIONS gpDS_11_27_43_2 Kagey2010 Data: Smc1 (MEF) Export Data
GENOMIC_REGIONS gpDS_11_27_44_2 Kagey2010 Data: Med12 (MEF) Export Data
GENOMIC_REGIONS gpDS_11_27_46_2 Kagey2010 Data: WCE (ES) Export Data
gpXP_000028 Marson2008 Data: Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
  • Histone Modifications
  • Transcription Factor Binding
SRP000712
  • [Data] Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 134 (2008). PubMed:
  • embryonic stem cell
  • v6.5
FEATURES gpDS_11_28_55_1 Regulated Genes Export Data
FEATURES gpDS_11_28_56_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_28_48_2 Marson2008 Data: HEK4me3 Export Data
GENOMIC_REGIONS gpDS_11_28_42_2 Marson2008 Data: H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_28_46_2 Marson2008 Data: H3K79me2 Export Data
GENOMIC_REGIONS gpDS_11_28_43_2 Marson2008 Data: H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_28_45_2 Marson2008 Data: Sox2 Export Data
GENOMIC_REGIONS gpDS_11_28_47_2 Marson2008 Data: Tcf3 Export Data
GENOMIC_REGIONS gpDS_11_28_40_2 Marson2008 Data: Nanog Export Data
GENOMIC_REGIONS gpDS_11_28_41_2 Marson2008 Data: Suz12 Export Data
GENOMIC_REGIONS gpDS_11_28_44_2 Marson2008 Data: Oct4 Export Data
GENOMIC_REGIONS gpDS_11_28_49_2 Marson2008 Data: WCE Export Data
gpXP_000030 Young Lab Data: ChIP-Seq data in secondary fibroblast with dox-inducible cassettes for Oct4, Sox2 and Klf4.
  • Histone Modifications
  • Polymerase Activity
  • Transcription Factor Binding
SRP003667
  • secondary fibroblast
FEATURES gpDS_11_30_22_1 Regulated Genes Export Data
FEATURES gpDS_11_30_23_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_30_13_2 Young Lab Data: H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_30_14_2 Young Lab Data: E2f4 Export Data
GENOMIC_REGIONS gpDS_11_30_16_2 Young Lab Data: WCE Export Data
GENOMIC_REGIONS gpDS_11_30_15_2 Young Lab Data: RNA Pol II Export Data
gpXP_000031 Ho2009 Data: esBAF is an essential component of the core pluripotency transcriptional network
  • Transcription Factor Binding
SRP000715
  • [Data] An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network. Proc. Natl. Acad. Sci. U.S.A. 106 (2009). PubMed:
FEATURES gpDS_11_31_21_1 Regulated Genes Export Data
FEATURES gpDS_11_31_22_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_31_15_2 Ho2009 Data: IgG Export Data
GENOMIC_REGIONS gpDS_11_31_14_2 Ho2009 Data: Smarca4 Export Data
gpXP_000032 Visel2009 Data: ChIP-seq Accurately Predicts Tissue-Specific Activity of Enhancers
  • Transcription Factor Binding
SRP000600
  • [Data] ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457 (2009). PubMed:
GENOMIC_REGIONS gpDS_11_32_20_2 Preliminary TFBS Export Data
FEATURES gpDS_11_32_22_1 Regulated Genes Export Data
FEATURES gpDS_11_32_23_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_32_17_2 Visel2009 Data: p300 forebrain Export Data
GENOMIC_REGIONS gpDS_11_32_16_2 Visel2009 Data: p300 midbrain Export Data
GENOMIC_REGIONS gpDS_11_32_18_2 Visel2009 Data: p300 limb Export Data
gpXP_000042 Wilson2010 Data: Combinatorial Transcriptional Control in Blood Stem/Progenitor Cells: Genome-wide Analysis of 10 major Transcriptional Regulators
  • Histone Modifications
  • Transcription Factor Binding
SRP002575
  • [Data] Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. Cell Stem Cell 7 (2010). PubMed:
  • haematopoietic cell
  • HPC-7
FEATURES gpDS_11_42_41_1 Regulated Genes Export Data
FEATURES gpDS_11_42_42_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_42_29_2 Wilson2010 Data: Fli1 Export Data
GENOMIC_REGIONS gpDS_11_42_25_2 Wilson2010 Data: Lyl1 Export Data
GENOMIC_REGIONS gpDS_11_42_28_2 Wilson2010 Data: Sfpi1 Export Data
GENOMIC_REGIONS gpDS_11_42_26_2 Wilson2010 Data: Tal1 Export Data
GENOMIC_REGIONS gpDS_11_42_30_2 Wilson2010 Data: Lmo2 Export Data
GENOMIC_REGIONS gpDS_11_42_32_2 Wilson2010 Data: Gata2 Export Data
GENOMIC_REGIONS gpDS_11_42_27_2 Wilson2010 Data: Runx1 Export Data
GENOMIC_REGIONS gpDS_11_42_31_2 Wilson2010 Data: Gfi1b Export Data
GENOMIC_REGIONS gpDS_11_42_33_2 Wilson2010 Data: Meis1 Export Data
GENOMIC_REGIONS gpDS_11_42_35_2 Wilson2010 Data: IgG Export Data
GENOMIC_REGIONS gpDS_11_42_34_2 Wilson2010 Data: H3AcK9 Export Data
gpXP_000043 tHoen2008 Data: High throughput sequencing of the hippocampal transcriptome of wild type and DCLK-short over-expressing mice
  • Expression
N/A
  • [Data] Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res. 36 (2008). PubMed:
  • hippocampus
  • hippocampal cell
FEATURES gpDS_11_43_38_1 Gene Expression with Differential Expression Statistics Export Data
FEATURES gpDS_11_43_39_1 Differentially Expressed Genes in DLCK.TG vs. WT Export Data
GENOMIC_REGIONS gpDS_11_43_27_2 tHoen2008 Data: DLCK.TG.1 Export Data
GENOMIC_REGIONS gpDS_11_43_28_2 tHoen2008 Data: DLCK.TG.2 Export Data
GENOMIC_REGIONS gpDS_11_43_29_2 tHoen2008 Data: DLCK.TG.3 Export Data
GENOMIC_REGIONS gpDS_11_43_30_2 tHoen2008 Data: DLCK.TG.4 Export Data
GENOMIC_REGIONS gpDS_11_43_31_2 tHoen2008 Data: WT.1 Export Data
GENOMIC_REGIONS gpDS_11_43_32_2 tHoen2008 Data: WT.2 Export Data
GENOMIC_REGIONS gpDS_11_43_33_2 tHoen2008 Data: WT.3 Export Data
GENOMIC_REGIONS gpDS_11_43_34_2 tHoen2008 Data: WT.4 Export Data
gpXP_000048 Heng2010 Data: Genome-Wide Mapping of Nr5a2 in Mouse Embryonic Stem Cells
  • Transcription Factor Binding
SRP001796
  • [Data] The nuclear receptor Nr5a2 can replace Oct4 in the reprogramming of murine somatic cells to pluripotent cells. Cell Stem Cell 6 (2010). PubMed:
  • embryonic stem cell
FEATURES gpDS_11_48_21_1 Regulated Genes Export Data
FEATURES gpDS_11_48_22_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_48_14_2 Heng2010 Data: Nr5a2 Export Data
GENOMIC_REGIONS gpDS_11_48_15_2 Heng2010 Data: Mock ChIP Export Data
gpXP_000052 Li2010 Data: Jarid2 and PRC2, Partner in Regulating Gene Expression
  • Transcription Factor Binding
SRP001723
  • [Data] Jarid2 and PRC2, partners in regulating gene expression. Genes Dev. 24 (2010). PubMed:
  • embryonic stem cell
  • v6.5
GENOMIC_REGIONS gpDS_11_52_10_2 Preliminary TFBS Export Data
FEATURES gpDS_11_52_12_1 Regulated Genes Export Data
FEATURES gpDS_11_52_13_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_52_7_2 Li2010 Data: Jarid2 Export Data
GENOMIC_REGIONS gpDS_11_52_8_2 Li2010 Data: Mtf2 Export Data
gpXP_000056 Kassouf2010 Data: Genome-wide mapping of in vivo SCL/DNA interactions in erythroid cells
  • Transcription Factor Binding
SRP002225
  • [Data] Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells. Genome Res. 20 (2010). PubMed:
  • fetal liver
  • fetal liver erythroblast
FEATURES gpDS_11_56_20_1 Regulated Genes Export Data
FEATURES gpDS_11_56_21_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_56_12_2 Kassouf2010 Data: RER SCL no AB Export Data
GENOMIC_REGIONS gpDS_11_56_14_2 Kassouf2010 Data: WT no AB Export Data
GENOMIC_REGIONS gpDS_11_56_11_2 Kassouf2010 Data: WT SCL Export Data
GENOMIC_REGIONS gpDS_11_56_13_2 Kassouf2010 Data: RER SCL Export Data
gpXP_000059 Gregg2010 Data: High resolution analysis of genomic imprinting in the embryonic and adult mouse brain AND Sex-specific imprinting in the mouse brain
  • Expression
SRP002811
  • [Data] High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science 329 (2010). PubMed:
  • brain (pre-optic area)
  • embryonic brain
  • medial prefrontal cortex
FEATURES gpDS_11_59_100_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_11_59_55_3 Gregg2010 Data: C57BL/6J adult brain POA.1 Export Data
GENOMIC_REGIONS gpDS_11_59_57_3 Gregg2010 Data: C57BL/6J adult brain POA.2 Export Data
GENOMIC_REGIONS gpDS_11_59_66_3 Gregg2010 Data: C57BL/6J adult brain POA.3 Export Data
GENOMIC_REGIONS gpDS_11_59_83_3 Gregg2010 Data: C57BL/6J adult brain POA.4 Export Data
GENOMIC_REGIONS gpDS_11_59_90_3 Gregg2010 Data: C57BL/6J adult brain POA.5 Export Data
GENOMIC_REGIONS gpDS_11_59_67_3 Gregg2010 Data: CastEiJ adult brain POA.1 Export Data
GENOMIC_REGIONS gpDS_11_59_68_3 Gregg2010 Data: CastEiJ adult brain POA.2 Export Data
GENOMIC_REGIONS gpDS_11_59_78_3 Gregg2010 Data: CastEiJ adult brain POA.3 Export Data
GENOMIC_REGIONS gpDS_11_59_92_3 Gregg2010 Data: CastEiJ adult brain POA.4 Export Data
GENOMIC_REGIONS gpDS_11_59_93_3 Gregg2010 Data: CastEiJ adult brain POA.5 Export Data
GENOMIC_REGIONS gpDS_11_59_53_3 Gregg2010 Data: CastEiJ adult brain PFC.1 Export Data
GENOMIC_REGIONS gpDS_11_59_56_3 Gregg2010 Data: CastEiJ adult brain PFC.2 Export Data
GENOMIC_REGIONS gpDS_11_59_61_3 Gregg2010 Data: CastEiJ adult brain PFC.3 Export Data
GENOMIC_REGIONS gpDS_11_59_76_3 Gregg2010 Data: CastEiJ adult brain PFC.4 Export Data
GENOMIC_REGIONS gpDS_11_59_86_3 Gregg2010 Data: CastEiJ adult brain PFC.5 Export Data
GENOMIC_REGIONS gpDS_11_59_91_3 Gregg2010 Data: CastEiJ adult brain PFC.6 Export Data
GENOMIC_REGIONS gpDS_11_59_94_3 Gregg2010 Data: CastEiJ adult brain PFC.7 Export Data
GENOMIC_REGIONS gpDS_11_59_50_3 Gregg2010 Data: CastEiJ embryonic brain.1 Export Data
GENOMIC_REGIONS gpDS_11_59_52_3 Gregg2010 Data: CastEiJ embryonic brain.2 Export Data
GENOMIC_REGIONS gpDS_11_59_58_3 Gregg2010 Data: CastEiJ embryonic brain.3 Export Data
GENOMIC_REGIONS gpDS_11_59_63_3 Gregg2010 Data: CastEiJ embryonic brain.4 Export Data
GENOMIC_REGIONS gpDS_11_59_69_3 Gregg2010 Data: CastEiJ embryonic brain.5 Export Data
GENOMIC_REGIONS gpDS_11_59_70_3 Gregg2010 Data: CastEiJ embryonic brain.6 Export Data
GENOMIC_REGIONS gpDS_11_59_73_3 Gregg2010 Data: CastEiJ embryonic brain.7 Export Data
GENOMIC_REGIONS gpDS_11_59_77_3 Gregg2010 Data: CastEiJ embryonic brain.8 Export Data
GENOMIC_REGIONS gpDS_11_59_79_3 Gregg2010 Data: CastEiJ embryonic brain.9 Export Data
GENOMIC_REGIONS gpDS_11_59_82_3 Gregg2010 Data: CastEiJ embryonic brain.10 Export Data
GENOMIC_REGIONS gpDS_11_59_88_3 Gregg2010 Data: CastEiJ embryonic brain.11 Export Data
GENOMIC_REGIONS gpDS_11_59_49_3 Gregg2010 Data: C57BL/6J adult brain PFC.1 Export Data
GENOMIC_REGIONS gpDS_11_59_54_3 Gregg2010 Data: C57BL/6J adult brain PFC.2 Export Data
GENOMIC_REGIONS gpDS_11_59_71_3 Gregg2010 Data: C57BL/6J adult brain PFC.3 Export Data
GENOMIC_REGIONS gpDS_11_59_74_3 Gregg2010 Data: C57BL/6J adult brain PFC.4 Export Data
GENOMIC_REGIONS gpDS_11_59_85_3 Gregg2010 Data: C57BL/6J adult brain PFC.5 Export Data
GENOMIC_REGIONS gpDS_11_59_87_3 Gregg2010 Data: C57BL/6J adult brain PFC.6 Export Data
GENOMIC_REGIONS gpDS_11_59_89_3 Gregg2010 Data: C57BL/6J adult brain PFC.7 Export Data
GENOMIC_REGIONS gpDS_11_59_51_3 Gregg2010 Data: C57BL/6J embryonic brain.1 Export Data
GENOMIC_REGIONS gpDS_11_59_59_3 Gregg2010 Data: C57BL/6J embryonic brain.2 Export Data
GENOMIC_REGIONS gpDS_11_59_60_3 Gregg2010 Data: C57BL/6J embryonic brain.3 Export Data
GENOMIC_REGIONS gpDS_11_59_62_3 Gregg2010 Data: C57BL/6J embryonic brain.4 Export Data
GENOMIC_REGIONS gpDS_11_59_64_3 Gregg2010 Data: C57BL/6J embryonic brain.5 Export Data
GENOMIC_REGIONS gpDS_11_59_65_3 Gregg2010 Data: C57BL/6J embryonic brain.6 Export Data
GENOMIC_REGIONS gpDS_11_59_72_3 Gregg2010 Data: C57BL/6J embryonic brain.7 Export Data
GENOMIC_REGIONS gpDS_11_59_75_3 Gregg2010 Data: C57BL/6J embryonic brain.8 Export Data
GENOMIC_REGIONS gpDS_11_59_80_3 Gregg2010 Data: C57BL/6J embryonic brain.9 Export Data
GENOMIC_REGIONS gpDS_11_59_81_3 Gregg2010 Data: C57BL/6J embryo. brain.10 Export Data
GENOMIC_REGIONS gpDS_11_59_84_3 Gregg2010 Data: C57BL/6J embryo. brain.11 Export Data
gpXP_000067 Wilson2009 Data: The Transcriptional Programme Controlled by the Stem Cell Leukaemia Gene Scl/Tal1 during Early Embryonic Haematopoietic Development
  • Transcription Factor Binding
SRP000972
  • [Data] The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. Blood 113 (2009). PubMed:
  • haematopoietic cell
  • HPC-7
GENOMIC_REGIONS gpDS_11_67_13_2 Preliminary TFBS Export Data
FEATURES gpDS_11_67_15_1 Regulated Genes Export Data
FEATURES gpDS_11_67_16_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_67_10_2 Wilson2009 Data: Scl Export Data
GENOMIC_REGIONS gpDS_11_67_11_2 Wilson2009 Data: Scl (Vancouver) Export Data
gpXP_000068 Schnetz2010 Data: CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression
  • Transcription Factor Binding
SRP002695
  • [Data] CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression. PLoS Genet. 6 (2010). PubMed:
  • embryonic stem cell
GENOMIC_REGIONS gpDS_11_68_16_2 Preliminary TFBS Export Data
FEATURES gpDS_11_68_18_1 Regulated Genes Export Data
FEATURES gpDS_11_68_19_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_68_14_2 Schnetz2010 Data: CHD7 Export Data
GENOMIC_REGIONS gpDS_11_68_13_2 Schnetz2010 Data: Ep300 Export Data
gpXP_000071 Krebs2010 Data: ATAC and Mediator coactivators form a stable complex and regulates a set of non-coding RNA genes
  • Transcription Factor Binding
SRP002706
  • [Data] ATAC and Mediator coactivators form a stable complex and regulate a set of non-coding RNA genes. EMBO Rep. 11 (2010). PubMed:
  • embryonic stem cell
  • E14
FEATURES gpDS_11_71_15_1 Regulated Genes Export Data
FEATURES gpDS_11_71_16_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_71_9_2 Krebs2010 Data: Mock Export Data
GENOMIC_REGIONS gpDS_11_71_8_2 Krebs2010 Data: Luzp1 Export Data
gpXP_000072 Treiber2010 Data: Genome-wide mapping of EBF1 binding sites in murine pre B-cells
  • Transcription Factor Binding
SRP002223
  • [Data] Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin. Immunity 32 (2010). PubMed:
  • A-MuLV pre B-cell
  • 38B9
FEATURES gpDS_11_72_19_1 Regulated Genes Export Data
FEATURES gpDS_11_72_20_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_72_12_2 Treiber2010 Data: EBF1 Export Data
GENOMIC_REGIONS gpDS_11_72_13_2 Treiber2010 Data: Input DNA Export Data
gpXP_000073 Wei2010 Data: Discrete Roles of STAT4 and STAT6 Transcription Factors in Tuning Epigenetic Modifications and Transcription during Helper T Cell Differentiation
  • Histone Modifications
  • Transcription Factor Binding
SRP002570
  • [Data] Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiation. Immunity 32 (2010). PubMed:
  • spleen and lymph nodes
  • T helper1 cell
  • T helper2 cell
GENOMIC_REGIONS gpDS_11_73_43_2 Preliminary TFBS Export Data
FEATURES gpDS_11_73_45_1 Regulated Genes Export Data
FEATURES gpDS_11_73_46_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_73_30_3 Wei2010 Data: Th1 H3K4me3 S4KO Export Data
GENOMIC_REGIONS gpDS_11_73_31_3 Wei2010 Data: Th1 H3K36me3 WT Export Data
GENOMIC_REGIONS gpDS_11_73_38_3 Wei2010 Data: Th2 H3K4me3 WT Export Data
GENOMIC_REGIONS gpDS_11_73_28_3 Wei2010 Data: Th2 H3K36me3 WT Export Data
GENOMIC_REGIONS gpDS_11_73_34_3 Wei2010 Data: Th2 H3K36me3 S6KO Export Data
GENOMIC_REGIONS gpDS_11_73_33_3 Wei2010 Data: Th2 H3K27me3 WT Export Data
GENOMIC_REGIONS gpDS_11_73_24_3 Wei2010 Data: Th1 H3K4me3 WT Export Data
GENOMIC_REGIONS gpDS_11_73_37_3 Wei2010 Data: Th1 H3K36me3 S4KO Export Data
GENOMIC_REGIONS gpDS_11_73_36_3 Wei2010 Data: Th1 H3K27me3 WT Export Data
GENOMIC_REGIONS gpDS_11_73_25_3 Wei2010 Data: Th1 H3K27me3 S4KO Export Data
GENOMIC_REGIONS gpDS_11_73_27_3 Wei2010 Data: Th2 H3K4me3 S6KO Export Data
GENOMIC_REGIONS gpDS_11_73_39_3 Wei2010 Data: Th2 H3K27me3 S6KO Export Data
GENOMIC_REGIONS gpDS_11_73_32_3 Wei2010 Data: Th2 Stat6 S6KO Export Data
GENOMIC_REGIONS gpDS_11_73_29_3 Wei2010 Data: Th1 Stat4 WT Export Data
GENOMIC_REGIONS gpDS_11_73_26_3 Wei2010 Data: Th2 Stat6 WT Export Data
GENOMIC_REGIONS gpDS_11_73_35_3 Wei2010 Data: Th1 Stat4 S4KO Export Data
GENOMIC_REGIONS gpDS_11_73_40_3 Wei2010 Data: Th2 NRS Export Data
gpXP_000074 Lin2010 Data: A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate
  • Histone Modifications
  • Transcription Factor Binding
SRP002585
  • [Data] A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate. Nat. Immunol. 11 (2010). PubMed:
  • double-positive T cell
  • lymphoid cell
  • pre-pro-B cell
  • pro-B cell
FEATURES gpDS_11_74_50_1 Regulated Genes Export Data
FEATURES gpDS_11_74_51_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_74_33_2 Lin2010 Data: pre-pro-B H3K4me1-1h-E47ER Export Data
GENOMIC_REGIONS gpDS_11_74_38_2 Lin2010 Data: pre-pro-B H3K4me1-6h-E47ER Export Data
GENOMIC_REGIONS gpDS_11_74_39_2 Lin2010 Data: A12H3K4me1-6h-bHLHER Export Data
GENOMIC_REGIONS gpDS_11_74_41_2 Lin2010 Data: pre-pro-B H3K4me1-6h-bHLHER Export Data
GENOMIC_REGIONS gpDS_11_74_43_2 Lin2010 Data: A12 H3K4me1-6h-E47ER Export Data
GENOMIC_REGIONS gpDS_11_74_36_2 Lin2010 Data: pre-pro-B EBF-/- H3K4me1 Export Data
GENOMIC_REGIONS gpDS_11_74_44_2 Lin2010 Data: Lymphoid Input DNA Export Data
GENOMIC_REGIONS gpDS_11_74_35_2 Lin2010 Data: A12 E2A-6h-E47ER Export Data
GENOMIC_REGIONS gpDS_11_74_40_2 Lin2010 Data: pro-B RAG1-/- Ebf1 Export Data
GENOMIC_REGIONS gpDS_11_74_34_2 Lin2010 Data: pre-pro-B E2A-6h-E47ER Export Data
GENOMIC_REGIONS gpDS_11_74_37_2 Lin2010 Data: pro-B RAG1-/- Ctcf Export Data
GENOMIC_REGIONS gpDS_11_74_32_2 Lin2010 Data: pro-B RAG1-/- Foxo1 Export Data
GENOMIC_REGIONS gpDS_11_74_42_2 Lin2010 Data: pre-pro-B E2A-1h-E47ER Export Data
gpXP_000084 Tallack2010 Data: KLF1/EKLF regulatory networks in primary erythroid cells
  • Transcription Factor Binding
SRP002233
  • [Data] A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells. Genome Res. 20 (2010). PubMed:
  • fetal liver
  • erythroid cell
GENOMIC_REGIONS gpDS_11_84_15_2 Klf1 Export Data
FEATURES gpDS_11_84_17_1 Regulated Genes Export Data
FEATURES gpDS_11_84_18_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_84_12_2 Tallack2010 Data: Klf1 Export Data
GENOMIC_REGIONS gpDS_11_84_13_2 Tallack2010 Data: Input DNA Export Data
gpXP_000085 Cloonan2008 Data: Stem cell transcriptome profiling via massive-scale mRNA sequencing
  • Expression
SRP000723
  • [Data] Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods 5 (2008). PubMed:
  • embryonic stem cell
FEATURES gpDS_11_85_28_1 Gene Expression: mESC / mEB Export Data
FEATURES gpDS_11_85_29_1 Differentially Expressed Protein-Coding Genes (ESC / EB) Export Data
GENOMIC_REGIONS gpDS_11_85_31_3 Cloonan2008 Data: mEB.1 Export Data
GENOMIC_REGIONS gpDS_11_85_34_3 Cloonan2008 Data: mEB.2 Export Data
GENOMIC_REGIONS gpDS_11_85_35_3 Cloonan2008 Data: mEB.3 Export Data
GENOMIC_REGIONS gpDS_11_85_36_3 Cloonan2008 Data: mEB.4 Export Data
GENOMIC_REGIONS gpDS_11_85_24_3 Cloonan2008 Data: mESC.1 Export Data
GENOMIC_REGIONS gpDS_11_85_32_3 Cloonan2008 Data: mESC.2 Export Data
GENOMIC_REGIONS gpDS_11_85_33_3 Cloonan2008 Data: mESC.3 Export Data
gpXP_000086 Rahl2010 Data: Promoter proximal pausing and its regulation by c-Myc in embryonic stem cells
  • Polymerase Activity
  • Transcription Factor Binding
SRP002008
  • [Data] c-Myc regulates transcriptional pause release. Cell 141 (2010). PubMed:
  • embryonic stem cell
  • V6.5
  • ZHBTc4
GENOMIC_REGIONS gpDS_867_86_42_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_867_86_44_1 Regulated Genes Export Data
FEATURES gpDS_867_86_45_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_86_23_3 Rahl2010 Data: ZHBTc4_PolII_Dox24hr Export Data
GENOMIC_REGIONS gpDS_867_86_35_3 Rahl2010 Data: V6.5_PolII_shcMyc Export Data
GENOMIC_REGIONS gpDS_867_86_32_3 Rahl2010 Data: V6.5_PolII_Ser2P Export Data
GENOMIC_REGIONS gpDS_867_86_34_3 Rahl2010 Data: V6.5_PolII_Flavopiridol Export Data
GENOMIC_REGIONS gpDS_867_86_33_3 Rahl2010 Data: V6.5_PolII_shControl1 Export Data
GENOMIC_REGIONS gpDS_867_86_29_3 Rahl2010 Data: V6.5_PolII_shNelfA Export Data
GENOMIC_REGIONS gpDS_867_86_25_3 Rahl2010 Data: V6.5_PolII_shSpt5 Export Data
GENOMIC_REGIONS gpDS_867_86_30_3 Rahl2010 Data: V6.5_PolII_DMSO6hr Export Data
GENOMIC_REGIONS gpDS_867_86_38_3 Rahl2010 Data: V6.5_PolII_DMSO1hr Export Data
GENOMIC_REGIONS gpDS_867_86_26_3 Rahl2010 Data: V6.5_PolII_10058F4 Export Data
GENOMIC_REGIONS gpDS_867_86_39_3 Rahl2010 Data: V6.5_PolII_shControl2 Export Data
GENOMIC_REGIONS gpDS_867_86_27_3 Rahl2010 Data: ZHBTc4_PolII_Dox12hr Export Data
GENOMIC_REGIONS gpDS_867_86_31_3 Rahl2010 Data: ZHBTc4_PolII_Dox0hr Export Data
GENOMIC_REGIONS gpDS_867_86_36_3 Rahl2010 Data: V6.5_PolII_Ser5P Export Data
GENOMIC_REGIONS gpDS_867_86_24_3 Rahl2010 Data: V6.5_Spt5 Export Data
GENOMIC_REGIONS gpDS_867_86_37_3 Rahl2010 Data: V6.5_Ctr9 Export Data
GENOMIC_REGIONS gpDS_867_86_28_3 Rahl2010 Data: V6.5_NelfA Export Data
gpXP_000087 Mendenhall2010 Data: GC-rich sequence elements recruit PRC2 in mammalian ES cells.
  • Transcription Factor Binding
SRP004556
  • [Data] GC-rich sequence elements recruit PRC2 in mammalian ES cells. PLoS Genet. 6 (2010). PubMed:
FEATURES gpDS_867_87_11_1 Regulated Genes Export Data
FEATURES gpDS_867_87_12_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_87_9_2 DNA-Protein Binding Peaks Export Data
GENOMIC_REGIONS gpDS_867_87_6_3 Mendenhall2010 Data: YY1_ESC Export Data
GENOMIC_REGIONS gpDS_867_87_5_3 Mendenhall2010 Data: YY1_NPC Export Data
gpXP_000101 Ma2011 Data: Role of Prdm14 in mouse embryonic stem cells: ChIP-seq and RNA-seq analyses
  • Expression
  • Histone Modifications
  • Transcription Factor Binding
SRP004451
  • [Data] Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates. Nat. Struct. Mol. Biol. 18 (2011). PubMed:
  • embryonic stem cell
  • LF2
GENOMIC_REGIONS gpDS_867_101_15_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_867_101_17_1 Regulated Genes Export Data
FEATURES gpDS_867_101_18_1 TFAS Export Data
FEATURES gpDS_867_101_27_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_867_101_22_3 Ma2011 Data: Prdm14 KD Export Data
GENOMIC_REGIONS gpDS_867_101_21_3 Ma2011 Data: WT Export Data
GENOMIC_REGIONS gpDS_867_101_11_3 Ma2011 Data: Prdm14 Export Data
GENOMIC_REGIONS gpDS_867_101_10_3 Ma2011 Data: Prdm14-FLAG-HA Export Data
GENOMIC_REGIONS gpDS_867_101_9_3 Ma2011 Data: H3K4me1 Export Data
GENOMIC_REGIONS gpDS_867_101_12_3 Ma2011 Data: Input-DNA Export Data
gpXP_000102 Trapnell2010 Data: Transcript assembly and abundance estimation from RNA-Seq Data
  • Expression
SRP002119
  • [Data] Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28 (2010). PubMed:
  • C2C12
FEATURES gpDS_11_102_27_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_11_102_16_3 Trapnell2010 Data: -24h.1 Export Data
GENOMIC_REGIONS gpDS_11_102_22_3 Trapnell2010 Data: -24h.2 Export Data
GENOMIC_REGIONS gpDS_11_102_14_3 Trapnell2010 Data: 120h.1 Export Data
GENOMIC_REGIONS gpDS_11_102_19_3 Trapnell2010 Data: 120h.2 Export Data
GENOMIC_REGIONS gpDS_11_102_13_3 Trapnell2010 Data: 168h.1 Export Data
GENOMIC_REGIONS gpDS_11_102_15_3 Trapnell2010 Data: 168h.2 Export Data
GENOMIC_REGIONS gpDS_11_102_21_3 Trapnell2010 Data: 168h.3 Export Data
GENOMIC_REGIONS gpDS_11_102_17_3 Trapnell2010 Data: 60h.1 Export Data
GENOMIC_REGIONS gpDS_11_102_18_3 Trapnell2010 Data: 60h.2 Export Data
GENOMIC_REGIONS gpDS_11_102_20_3 Trapnell2010 Data: 60h.3 Export Data
gpXP_000103 Bilodeau and Young 2011 Data: ChIP-Seq data for histone marks in MEFs before and after ectopic expression of reprogramming factors
  • Histone Modifications
SRP005409
  • embryonic fibroblast
  • secondary fibroblast
GENOMIC_REGIONS gpDS_867_103_13_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_867_103_15_1 Regulated Genes Export Data
FEATURES gpDS_867_103_16_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_103_9_3 BilodeauYoung2011 Data: H3K4me3_MEFs Export Data
GENOMIC_REGIONS gpDS_867_103_7_3 BilodeauYoung2011 Data: H3K27me3_MEFs Export Data
GENOMIC_REGIONS gpDS_867_103_8_3 BilodeauYoung2011 Data: H3K9me3_MEFs Export Data
GENOMIC_REGIONS gpDS_867_103_10_3 BilodeauYoung2011 Data: H3K9me3_2nd MEFs Export Data
gpXP_000114 Li2011 Data: LIM domain binding protein 1 regulates a transcriptional program essential for hematopoietic stem cell maintenance
  • Transcription Factor Binding
SRP004905
  • [Data] Nuclear adaptor Ldb1 regulates a transcriptional program essential for the maintenance of hematopoietic stem cells. Nat. Immunol. 12 (2011). PubMed:
  • bone marrow hematopoietic progenitor
GENOMIC_REGIONS gpDS_11_114_15_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_11_114_17_1 Regulated Genes Export Data
FEATURES gpDS_11_114_18_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_114_12_3 Li2011 Data: IgG Export Data
GENOMIC_REGIONS gpDS_11_114_10_3 Li2011 Data: Tal1 Export Data
GENOMIC_REGIONS gpDS_11_114_9_3 Li2011 Data: Gata2 Export Data
GENOMIC_REGIONS gpDS_11_114_11_3 Li2011 Data: Ldb1 Export Data
gpXP_000117 Jung2010 Data: Hoxc9 ChIP-seq in differentiating motor neurons
  • Transcription Factor Binding
SRP002530
  • [Data] Global control of motor neuron topography mediated by the repressive actions of a single hox gene. Neuron 67 (2010). PubMed:
  • motor neuron
  • Ainv15 (ATCC SCRC-1029)
FEATURES gpDS_11_117_11_1 Regulated Genes Export Data
FEATURES gpDS_11_117_12_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_117_9_2 Hoxc9 Export Data
GENOMIC_REGIONS gpDS_11_117_6_3 Jung2010 Data: Hoxc9 Export Data
gpXP_000119 RNA-seq Example Experiment
  • Expression
N/A
FEATURES gpDS_11_119_18_1 Gene Expression with Differential Expression Statistics Export Data
gpXP_000120 ChIP-seq Example Experiment N/A
GENOMIC_REGIONS gpDS_11_120_13_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_11_120_15_1 Regulated Genes Export Data
FEATURES gpDS_11_120_16_1 TFAS Export Data
FEATURES gpDS_11_120_18_1 Regulated Genes (narrow window) Export Data
gpXP_000121 Rugg-Gunn2010 Data: Expression and ChIP-seq analyses of embryonic stem cells, extraembryonic endoderm stem cells, and trophoblast stem cells
  • Histone Modifications
SRP002180
  • [Data] Distinct histone modifications in stem cell lines and tissue lineages from the early mouse embryo. Proc. Natl. Acad. Sci. U.S.A. 107 (2010). PubMed:
  • embryonic stem cell
  • extraembryonic endoderm stem cell
  • trophoblast stem cell
  • R1
FEATURES gpDS_867_121_31_1 Regulated Genes Export Data
FEATURES gpDS_867_121_32_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_121_35_1 DNA-Protein Binding Peaks + ChIP Peaks: H3K4me3_1_TSC, H3K4me3_2_ESC, H3K4me3_2_TSC, H3K4me3_1_Extraembryonic_SC, H3K4me3_2_Extraembryonic_SC, H3K4me3_1_ESC Export Data
GENOMIC_REGIONS gpDS_867_121_15_3 H3K4me3_1_TSC Export Data
GENOMIC_REGIONS gpDS_867_121_24_3 H3K27me3_1_XEN Export Data
GENOMIC_REGIONS gpDS_867_121_26_3 H3K4me3_1_ESC Export Data
GENOMIC_REGIONS gpDS_867_121_23_3 H3K4me3_2_XEN Export Data
GENOMIC_REGIONS gpDS_867_121_17_3 H3K27me3_1_ESC Export Data
GENOMIC_REGIONS gpDS_867_121_22_3 H3K4me3_1_XEN Export Data
GENOMIC_REGIONS gpDS_867_121_16_3 H3K4me3_2_ESC Export Data
GENOMIC_REGIONS gpDS_867_121_25_3 H3K27me3_2_XEN Export Data
GENOMIC_REGIONS gpDS_867_121_18_3 H3K27me3_2_ESC Export Data
GENOMIC_REGIONS gpDS_867_121_19_3 H3K4me3_2_TSC Export Data
GENOMIC_REGIONS gpDS_867_121_20_3 H3K27me3_1_TSC Export Data
GENOMIC_REGIONS gpDS_867_121_21_3 H3K27me3_2_TSC Export Data
gpXP_000125 Young Lab 2011 Data: ChIP-Seq data for REST, MCAF1, Ring1b and H4K20me3 in mouse embryonic stem (ES) cells
  • Histone Modifications
  • Transcription Factor Binding
SRP005428
  • embryonic stem cell
  • V6.5
GENOMIC_REGIONS gpDS_867_125_13_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_867_125_15_1 Regulated Genes Export Data
FEATURES gpDS_867_125_16_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_125_7_3 Young Lab 2011 Data: Ring1b Export Data
GENOMIC_REGIONS gpDS_867_125_9_3 Young Lab 2011 Data: MCAF1 Export Data
GENOMIC_REGIONS gpDS_867_125_8_3 Young Lab 2011 Data: REST Export Data
GENOMIC_REGIONS gpDS_867_125_10_3 Young Lab 2011 Data: H4K20me3 Export Data
gpXP_000127 Lee2011 Data: Graded Nodal/Activin Signaling Governs ES Cell Fate Decisions via Differential Recruitment of Phospho-Smad2 to Oct4 and Distinct Target Gene Subsets.
  • Transcription Factor Binding
SRP003467
  • [Data] Graded Nodal/Activin signaling titrates conversion of quantitative phospho-Smad2 levels into qualitative embryonic stem cell fate decisions. PLoS Genet. 7 (2011). PubMed:
GENOMIC_REGIONS gpDS_867_127_13_2 Smad2_Activin treated ESC Export Data
FEATURES gpDS_867_127_15_1 Regulated Genes Export Data
FEATURES gpDS_867_127_16_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_127_23_2 Smad2_DMSO treated ESC Export Data
GENOMIC_REGIONS gpDS_867_127_30_2 Smad2_SB treated ESC Export Data
GENOMIC_REGIONS gpDS_867_127_27_3 Lee2011 Data: Control_SB treatment Export Data
GENOMIC_REGIONS gpDS_867_127_10_3 Lee2011 Data: Control_Activin treatment Export Data
GENOMIC_REGIONS gpDS_867_127_20_3 Lee2011 Data: Control_DMSO treatment Export Data
GENOMIC_REGIONS gpDS_867_127_9_3 Lee2011 Data: Smad2_Activin treated ESC Export Data
GENOMIC_REGIONS gpDS_867_127_26_3 Lee2011 Data: Smad2_SB treated ESC Export Data
GENOMIC_REGIONS gpDS_867_127_19_3 Lee2011 Data: Smad2_DMSO treated ESC Export Data
gpXP_000147 Nielsen2008 Data: Genome-wide profiling of PPARgamma:RXR and RNA polymerase II
  • Polymerase Activity
  • Transcription Factor Binding
SRP000630
  • [Data] Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. Genes Dev. 22 (2008). PubMed:
  • 3T3-L1
GENOMIC_REGIONS gpDS_867_147_86_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_867_147_88_1 Regulated Genes Export Data
FEATURES gpDS_867_147_89_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_147_68_3 Stunnenburgh2008 Data: RXR_Day4 Export Data
GENOMIC_REGIONS gpDS_867_147_83_3 Stunnenburgh2008 Data: RXR_Day2 Export Data
GENOMIC_REGIONS gpDS_867_147_69_3 Stunnenburgh2008 Data: RXR_Day6 Export Data
GENOMIC_REGIONS gpDS_867_147_78_3 Stunnenburgh2008 Data: PPARg_Day3 Export Data
GENOMIC_REGIONS gpDS_867_147_81_3 Stunnenburgh2008 Data: RXR_Day0 Export Data
GENOMIC_REGIONS gpDS_867_147_82_3 Stunnenburgh2008 Data: RXR_Day1 Export Data
GENOMIC_REGIONS gpDS_867_147_79_3 Stunnenburgh2008 Data: PPARg_Day4 Export Data
GENOMIC_REGIONS gpDS_867_147_66_3 Stunnenburgh2008 Data: PPARg_Day0 Export Data
GENOMIC_REGIONS gpDS_867_147_77_3 Stunnenburgh2008 Data: PPARg_Day2 Export Data
GENOMIC_REGIONS gpDS_867_147_80_3 Stunnenburgh2008 Data: PPARg_Day6 Export Data
GENOMIC_REGIONS gpDS_867_147_76_3 Stunnenburgh2008 Data: PPARg_Day1 Export Data
GENOMIC_REGIONS gpDS_867_147_67_3 Stunnenburgh2008 Data: RXR_Day3 Export Data
GENOMIC_REGIONS gpDS_867_147_71_3 Stunnenburgh2008 Data: RNA Pol II_Day1 Export Data
GENOMIC_REGIONS gpDS_867_147_70_3 Stunnenburgh2008 Data: RNA Pol II_Day0 Export Data
GENOMIC_REGIONS gpDS_867_147_74_3 Stunnenburgh2008 Data: RNA Pol II_Day4 Export Data
GENOMIC_REGIONS gpDS_867_147_73_3 Stunnenburgh2008 Data: RNA Pol II_Day3 Export Data
GENOMIC_REGIONS gpDS_867_147_75_3 Stunnenburgh2008 Data: RNA Pol II_Day6 Export Data
GENOMIC_REGIONS gpDS_867_147_72_3 Stunnenburgh2008 Data: RNA Pol II_Day2 Export Data
gpXP_000151 Pasini2010 Data: Genome wide mapping of Jarid2 and Suz12 binding sites in mouse ES cells before and after Jarid2 depletion
  • Transcription Factor Binding
SRP001801
  • [Data] JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells. Nature 464 (2010). PubMed:
  • embryonic stem cell
FEATURES gpDS_867_151_25_1 Regulated Genes Export Data
FEATURES gpDS_867_151_26_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_151_20_3 Pasini2010 Data: shSCR_Jarid2_ES Export Data
GENOMIC_REGIONS gpDS_867_151_9_3 Pasini2010 Data: shSCR_Suz12_ES Export Data
GENOMIC_REGIONS gpDS_867_151_8_3 Pasini2010 Data: shJarid2_Suz12_ES Export Data
GENOMIC_REGIONS gpDS_867_151_19_3 Pasini2010 Data: shJarid2_Jarid2_ES Export Data
gpXP_000156 Min2011 Data: Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
  • Expression
SRP005604
  • [Data] Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev. 25 (2011). PubMed:
  • in vitro
  • embryonic fibroblast
  • embryonic stem cell
  • v6.5
FEATURES gpDS_11_156_25_1 GRO-seq MEF / ESC Export Data
FEATURES gpDS_11_156_26_1 Differentially Expressed Genes: ESC / MEF Export Data
GENOMIC_REGIONS gpDS_11_156_16_3 Min2011 Data: MEF (R2) Export Data
GENOMIC_REGIONS gpDS_11_156_17_3 Min2011 Data: MEF (R1) Export Data
GENOMIC_REGIONS gpDS_11_156_19_3 Min2011 Data: ESC (R2) Export Data
GENOMIC_REGIONS gpDS_11_156_18_3 Min2011 Data: ESC (R3) Export Data
GENOMIC_REGIONS gpDS_11_156_20_3 Min2011 Data: ESC (R1) Export Data
gpXP_000168 Guttman2010 Data: Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs
  • Expression
SRP002325
  • [Analysis] GeneProf: analysis of high-throughput sequencing experiments. Nat. Methods 9 (2012). PubMed:
  • [Data] Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol. 28 (2010). PubMed:
  • in vitro
  • lung
  • embryonic stem cell
  • lung fibroblast
  • neuronal precursor
FEATURES gpDS_11_168_20_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_11_168_15_3 Guttman2010 Data: ESC Export Data
GENOMIC_REGIONS gpDS_11_168_14_3 Guttman2010 Data: MLF Export Data
GENOMIC_REGIONS gpDS_11_168_13_3 Guttman2010 Data: NPC Export Data
gpXP_000169 Walker2010 Data: Genome-wide map of PCL2 (Polycomb-like 2) enrichment in undifferentiated mouse embryonic stem cells
  • Transcription Factor Binding
SRP001841
  • [Data] Polycomb-like 2 associates with PRC2 and regulates transcriptional networks during mouse embryonic stem cell self-renewal and differentiation. Cell Stem Cell 6 (2010). PubMed:
  • embryonic stem cell
  • R1
GENOMIC_REGIONS gpDS_11_169_11_2 Mtf2 Export Data
FEATURES gpDS_11_169_13_1 Regulated Genes Export Data
FEATURES gpDS_11_169_14_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_169_8_3 Walker2010 Data: Mtf2 Export Data
gpXP_000175 Chiang2010 Data: Deletion of Tardbp Down-Regulates Tbc1d1, a Gene Linked to Obesity, and Alters Body Fat Metabolism
  • Expression
SRP002546
  • [Data] Deletion of TDP-43 down-regulates Tbc1d1, a gene linked to obesity, and alters body fat metabolism. Proc. Natl. Acad. Sci. U.S.A. 107 (2010). PubMed:
  • embryonic stem cell
FEATURES gpDS_11_175_17_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_11_175_11_3 Chiang2010 Data: iTDPKO.2 Export Data
GENOMIC_REGIONS gpDS_11_175_12_3 Chiang2010 Data: iTDPKO.3 Export Data
GENOMIC_REGIONS gpDS_11_175_10_3 Chiang2010 Data: iTDPKO.1 Export Data
GENOMIC_REGIONS gpDS_11_175_8_3 Chiang2010 Data: cTDP.1 Export Data
GENOMIC_REGIONS gpDS_11_175_9_3 Chiang2010 Data: cTDP.2 Export Data
gpXP_000178 Law2010 Data: A SNF2 protein targets variable copy number repeats and thereby influences allele-specific expression
  • Transcription Factor Binding
SRP002608
  • [Data] ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner. Cell 143 (2010). PubMed:
  • embryonic stem cell
  • primary erythroblast
  • E14
GENOMIC_REGIONS gpDS_11_178_15_2 mESC ATRX Export Data
FEATURES gpDS_11_178_17_1 Regulated Genes (Mouse) Export Data
FEATURES gpDS_11_178_18_1 TFAS (Mouse) Export Data
GENOMIC_REGIONS gpDS_11_178_27_2 hErythroid ATRX Export Data
FEATURES gpDS_11_178_29_1 Regulated Genes (Human) Export Data
FEATURES gpDS_11_178_30_1 TFAS (Human) Export Data
GENOMIC_REGIONS gpDS_11_178_24_3 Law2010 Data: hErythroid Input Export Data
GENOMIC_REGIONS gpDS_11_178_12_3 Law2010 Data: mESC Input Export Data
GENOMIC_REGIONS gpDS_11_178_23_3 Law2010 Data: hErythroid ATRX Export Data
GENOMIC_REGIONS gpDS_11_178_11_3 Law2010 Data: mESC ATRX Export Data
gpXP_000191 Rabani2011 Data: RNA-Seq of Mouse Dendritic Cells
  • Expression
SRP006762
  • [Data] Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29 (2011). PubMed:
  • dendritic cell
FEATURES gpDS_11_191_7_1 Gene Expression Read Counts Export Data
GENOMIC_REGIONS gpDS_11_191_4_3 Rabani2011 Data: Dendritic Cell RNA-seq Export Data
gpXP_000194 Wu et al. Data: Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
  • Transcription Factor Binding
SRP005456
  • [Data] Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature 473 (2011). PubMed:
  • embryonic stem cell
  • E14TG2A
FEATURES gpDS_867_194_17_1 Regulated Genes Export Data
FEATURES gpDS_867_194_18_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_194_26_1 Dna-Protein Binding Peaks Export Data
GENOMIC_REGIONS gpDS_867_194_12_3 Wu2011 Data: IgG_no KD control Export Data
GENOMIC_REGIONS gpDS_867_194_22_3 Wu2011 Data: IgG_mock KD control Export Data
GENOMIC_REGIONS gpDS_867_194_9_3 Wu2011 Data: Tet1_no KD_ES cells Export Data
GENOMIC_REGIONS gpDS_867_194_21_3 Wu2011 Data: Tet1_mock KD_ES cells Export Data
GENOMIC_REGIONS gpDS_867_194_11_3 Wu2011 Data: Tet1_Tet1 KD-2_ES cells Export Data
GENOMIC_REGIONS gpDS_867_194_10_3 Wu2011 Data: Tet1_Tet1 KD-1_ES cells Export Data
gpXP_000195 Tang2011 Data: Global Deterministic and Stochastic Allelic Specific Gene Expression in Single Blastomeres of Mouse Early Embryos
  • Expression
SRP002609
  • [Data] Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS ONE 6 (2011). PubMed:
  • 2-cell blastomere
  • 4-cell blastomere
  • 8-cell blastomere
  • Dicer-/- oocyte
  • oocyte
FEATURES gpDS_11_195_55_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_11_195_28_3 Tang2011 Data: blastomere 4-cell.1 Export Data
GENOMIC_REGIONS gpDS_11_195_31_3 Tang2011 Data: blastomere 4-cell.2 Export Data
GENOMIC_REGIONS gpDS_11_195_33_3 Tang2011 Data: blastomere 4-cell.3 Export Data
GENOMIC_REGIONS gpDS_11_195_43_3 Tang2011 Data: blastomere 4-cell.4 Export Data
GENOMIC_REGIONS gpDS_11_195_48_3 Tang2011 Data: blastomere 4-cell.5 Export Data
GENOMIC_REGIONS gpDS_11_195_50_3 Tang2011 Data: blastomere 4-cell.6 Export Data
GENOMIC_REGIONS gpDS_11_195_30_3 Tang2011 Data: blastomere 8-cell.1 Export Data
GENOMIC_REGIONS gpDS_11_195_35_3 Tang2011 Data: blastomere 8-cell.2 Export Data
GENOMIC_REGIONS gpDS_11_195_44_3 Tang2011 Data: blastomere 8-cell.3 Export Data
GENOMIC_REGIONS gpDS_11_195_45_3 Tang2011 Data: blastomere 8-cell.4 Export Data
GENOMIC_REGIONS gpDS_11_195_47_3 Tang2011 Data: blastomere 8-cell.5 Export Data
GENOMIC_REGIONS gpDS_11_195_49_3 Tang2011 Data: blastomere 8-cell.6 Export Data
GENOMIC_REGIONS gpDS_11_195_29_3 Tang2011 Data: oocyte.1 Export Data
GENOMIC_REGIONS gpDS_11_195_34_3 Tang2011 Data: oocyte.2 Export Data
GENOMIC_REGIONS gpDS_11_195_27_3 Tang2011 Data: blastomere 2-cell.1 Export Data
GENOMIC_REGIONS gpDS_11_195_32_3 Tang2011 Data: blastomere 2-cell.2 Export Data
GENOMIC_REGIONS gpDS_11_195_37_3 Tang2011 Data: blastomere 2-cell.3 Export Data
GENOMIC_REGIONS gpDS_11_195_38_3 Tang2011 Data: blastomere 2-cell.4 Export Data
GENOMIC_REGIONS gpDS_11_195_39_3 Tang2011 Data: blastomere 2-cell.5 Export Data
GENOMIC_REGIONS gpDS_11_195_40_3 Tang2011 Data: blastomere 2-cell.6 Export Data
GENOMIC_REGIONS gpDS_11_195_41_3 Tang2011 Data: blastomere 2-cell.7 Export Data
GENOMIC_REGIONS gpDS_11_195_46_3 Tang2011 Data: blastomere 2-cell.8 Export Data
GENOMIC_REGIONS gpDS_11_195_36_3 Tang2011 Data: oocyte DICER-KO.1 Export Data
GENOMIC_REGIONS gpDS_11_195_42_3 Tang2011 Data: oocyte DICER-KO.2 Export Data
gpXP_000196 Islam2011 Data: Characterization of the single-cell transcriptional landscape by highly multiplex RNA-Seq
  • Expression
SRP006834
  • [Data] Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res. 21 (2011). PubMed:
  • embryonic fibroblast
  • embryonic stem cell
  • R1
FEATURES gpDS_11_196_195_1 Gene Expression - Medium and High Coverage Datasets (>250k reads) Export Data
FEATURES gpDS_11_196_196_1 Gene Expression - High Coverage Datasets (>500k reads) Export Data
GENOMIC_REGIONS gpDS_11_196_100_3 Islam2011 Data: Single ESC.3 Export Data
GENOMIC_REGIONS gpDS_11_196_101_3 Islam2011 Data: Single ESC.4 Export Data
GENOMIC_REGIONS gpDS_11_196_102_3 Islam2011 Data: Single ESC.5 Export Data
GENOMIC_REGIONS gpDS_11_196_103_3 Islam2011 Data: Single ESC.6 Export Data
GENOMIC_REGIONS gpDS_11_196_104_3 Islam2011 Data: Single ESC.7 Export Data
GENOMIC_REGIONS gpDS_11_196_105_3 Islam2011 Data: Single ESC.8 Export Data
GENOMIC_REGIONS gpDS_11_196_106_3 Islam2011 Data: Single ESC.9 Export Data
GENOMIC_REGIONS gpDS_11_196_107_3 Islam2011 Data: Single ESC.10 Export Data
GENOMIC_REGIONS gpDS_11_196_108_3 Islam2011 Data: Single ESC.11 Export Data
GENOMIC_REGIONS gpDS_11_196_109_3 Islam2011 Data: Single ESC.12 Export Data
GENOMIC_REGIONS gpDS_11_196_110_3 Islam2011 Data: Single ESC.13 Export Data
GENOMIC_REGIONS gpDS_11_196_111_3 Islam2011 Data: Single ESC.14 Export Data
GENOMIC_REGIONS gpDS_11_196_112_3 Islam2011 Data: Single ESC.15 Export Data
GENOMIC_REGIONS gpDS_11_196_113_3 Islam2011 Data: Single ESC.16 Export Data
GENOMIC_REGIONS gpDS_11_196_114_3 Islam2011 Data: Single ESC.17 Export Data
GENOMIC_REGIONS gpDS_11_196_115_3 Islam2011 Data: Single ESC.18 Export Data
GENOMIC_REGIONS gpDS_11_196_116_3 Islam2011 Data: Single ESC.19 Export Data
GENOMIC_REGIONS gpDS_11_196_117_3 Islam2011 Data: Single ESC.20 Export Data
GENOMIC_REGIONS gpDS_11_196_118_3 Islam2011 Data: Single ESC.21 Export Data
GENOMIC_REGIONS gpDS_11_196_119_3 Islam2011 Data: Single ESC.22 Export Data
GENOMIC_REGIONS gpDS_11_196_120_3 Islam2011 Data: Single ESC.23 Export Data
GENOMIC_REGIONS gpDS_11_196_121_3 Islam2011 Data: Single ESC.24 Export Data
GENOMIC_REGIONS gpDS_11_196_122_3 Islam2011 Data: Single ESC.25 Export Data
GENOMIC_REGIONS gpDS_11_196_123_3 Islam2011 Data: Single ESC.26 Export Data
GENOMIC_REGIONS gpDS_11_196_124_3 Islam2011 Data: Single ESC.27 Export Data
GENOMIC_REGIONS gpDS_11_196_125_3 Islam2011 Data: Single ESC.28 Export Data
GENOMIC_REGIONS gpDS_11_196_126_3 Islam2011 Data: Single ESC.29 Export Data
GENOMIC_REGIONS gpDS_11_196_127_3 Islam2011 Data: Single ESC.30 Export Data
GENOMIC_REGIONS gpDS_11_196_128_3 Islam2011 Data: Single ESC.31 Export Data
GENOMIC_REGIONS gpDS_11_196_129_3 Islam2011 Data: Single ESC.32 Export Data
GENOMIC_REGIONS gpDS_11_196_130_3 Islam2011 Data: Single ESC.33 Export Data
GENOMIC_REGIONS gpDS_11_196_131_3 Islam2011 Data: Single ESC.34 Export Data
GENOMIC_REGIONS gpDS_11_196_132_3 Islam2011 Data: Single ESC.35 Export Data
GENOMIC_REGIONS gpDS_11_196_133_3 Islam2011 Data: Single ESC.36 Export Data
GENOMIC_REGIONS gpDS_11_196_134_3 Islam2011 Data: Single ESC.37 Export Data
GENOMIC_REGIONS gpDS_11_196_135_3 Islam2011 Data: Single ESC.38 Export Data
GENOMIC_REGIONS gpDS_11_196_136_3 Islam2011 Data: Single ESC.39 Export Data
GENOMIC_REGIONS gpDS_11_196_137_3 Islam2011 Data: Single ESC.40 Export Data
GENOMIC_REGIONS gpDS_11_196_138_3 Islam2011 Data: Single ESC.41 Export Data
GENOMIC_REGIONS gpDS_11_196_139_3 Islam2011 Data: Single ESC.42 Export Data
GENOMIC_REGIONS gpDS_11_196_140_3 Islam2011 Data: Single ESC.43 Export Data
GENOMIC_REGIONS gpDS_11_196_141_3 Islam2011 Data: Single ESC.44 Export Data
GENOMIC_REGIONS gpDS_11_196_142_3 Islam2011 Data: Single ESC.45 Export Data
GENOMIC_REGIONS gpDS_11_196_143_3 Islam2011 Data: Single ESC.46 Export Data
GENOMIC_REGIONS gpDS_11_196_144_3 Islam2011 Data: Single ESC.47 Export Data
GENOMIC_REGIONS gpDS_11_196_145_3 Islam2011 Data: Single ESC.48 Export Data
GENOMIC_REGIONS gpDS_11_196_98_3 Islam2011 Data: Single ESC.1 Export Data
GENOMIC_REGIONS gpDS_11_196_99_3 Islam2011 Data: Single ESC.2 Export Data
GENOMIC_REGIONS gpDS_11_196_146_3 Islam2011 Data: Single EF.1 Export Data
GENOMIC_REGIONS gpDS_11_196_147_3 Islam2011 Data: Single EF.2 Export Data
GENOMIC_REGIONS gpDS_11_196_148_3 Islam2011 Data: Single EF.3 Export Data
GENOMIC_REGIONS gpDS_11_196_149_3 Islam2011 Data: Single EF.4 Export Data
GENOMIC_REGIONS gpDS_11_196_150_3 Islam2011 Data: Single EF.5 Export Data
GENOMIC_REGIONS gpDS_11_196_151_3 Islam2011 Data: Single EF.6 Export Data
GENOMIC_REGIONS gpDS_11_196_152_3 Islam2011 Data: Single EF.7 Export Data
GENOMIC_REGIONS gpDS_11_196_153_3 Islam2011 Data: Single EF.8 Export Data
GENOMIC_REGIONS gpDS_11_196_154_3 Islam2011 Data: Single EF.9 Export Data
GENOMIC_REGIONS gpDS_11_196_155_3 Islam2011 Data: Single EF.10 Export Data
GENOMIC_REGIONS gpDS_11_196_156_3 Islam2011 Data: Single EF.11 Export Data
GENOMIC_REGIONS gpDS_11_196_157_3 Islam2011 Data: Single EF.12 Export Data
GENOMIC_REGIONS gpDS_11_196_158_3 Islam2011 Data: Single EF.13 Export Data
GENOMIC_REGIONS gpDS_11_196_159_3 Islam2011 Data: Single EF.14 Export Data
GENOMIC_REGIONS gpDS_11_196_160_3 Islam2011 Data: Single EF.15 Export Data
GENOMIC_REGIONS gpDS_11_196_161_3 Islam2011 Data: Single EF.16 Export Data
GENOMIC_REGIONS gpDS_11_196_162_3 Islam2011 Data: Single EF.17 Export Data
GENOMIC_REGIONS gpDS_11_196_163_3 Islam2011 Data: Single EF.18 Export Data
GENOMIC_REGIONS gpDS_11_196_164_3 Islam2011 Data: Single EF.19 Export Data
GENOMIC_REGIONS gpDS_11_196_165_3 Islam2011 Data: Single EF.20 Export Data
GENOMIC_REGIONS gpDS_11_196_166_3 Islam2011 Data: Single EF.21 Export Data
GENOMIC_REGIONS gpDS_11_196_167_3 Islam2011 Data: Single EF.22 Export Data
GENOMIC_REGIONS gpDS_11_196_168_3 Islam2011 Data: Single EF.23 Export Data
GENOMIC_REGIONS gpDS_11_196_169_3 Islam2011 Data: Single EF.24 Export Data
GENOMIC_REGIONS gpDS_11_196_170_3 Islam2011 Data: Single EF.25 Export Data
GENOMIC_REGIONS gpDS_11_196_171_3 Islam2011 Data: Single EF.26 Export Data
GENOMIC_REGIONS gpDS_11_196_172_3 Islam2011 Data: Single EF.27 Export Data
GENOMIC_REGIONS gpDS_11_196_173_3 Islam2011 Data: Single EF.28 Export Data
GENOMIC_REGIONS gpDS_11_196_174_3 Islam2011 Data: Single EF.29 Export Data
GENOMIC_REGIONS gpDS_11_196_175_3 Islam2011 Data: Single EF.30 Export Data
GENOMIC_REGIONS gpDS_11_196_176_3 Islam2011 Data: Single EF.31 Export Data
GENOMIC_REGIONS gpDS_11_196_177_3 Islam2011 Data: Single EF.32 Export Data
GENOMIC_REGIONS gpDS_11_196_178_3 Islam2011 Data: Single EF.33 Export Data
GENOMIC_REGIONS gpDS_11_196_179_3 Islam2011 Data: Single EF.34 Export Data
GENOMIC_REGIONS gpDS_11_196_180_3 Islam2011 Data: Single EF.35 Export Data
GENOMIC_REGIONS gpDS_11_196_181_3 Islam2011 Data: Single EF.36 Export Data
GENOMIC_REGIONS gpDS_11_196_182_3 Islam2011 Data: Single EF.37 Export Data
GENOMIC_REGIONS gpDS_11_196_183_3 Islam2011 Data: Single EF.38 Export Data
GENOMIC_REGIONS gpDS_11_196_184_3 Islam2011 Data: Single EF.39 Export Data
GENOMIC_REGIONS gpDS_11_196_185_3 Islam2011 Data: Single EF.40 Export Data
GENOMIC_REGIONS gpDS_11_196_186_3 Islam2011 Data: Single EF.41 Export Data
GENOMIC_REGIONS gpDS_11_196_187_3 Islam2011 Data: Single EF.42 Export Data
GENOMIC_REGIONS gpDS_11_196_188_3 Islam2011 Data: Single EF.43 Export Data
GENOMIC_REGIONS gpDS_11_196_189_3 Islam2011 Data: Single EF.44 Export Data
gpXP_000203 Yang2011 Data: Genome-wide binding of STAT3 and STAT5 under Th17 conditions
  • Transcription Factor Binding
SRP005277
  • [Data] Opposing regulation of the locus encoding IL-17 through direct, reciprocal actions of STAT3 and STAT5. Nat. Immunol. 12 (2011). PubMed:
  • in vitro polarized T helper17 cells
FEATURES gpDS_867_203_11_1 Regulated Genes Export Data
FEATURES gpDS_867_203_12_1 TFAS Export Data
GENOMIC_REGIONS gpDS_867_203_9_2 DNA-Protein Binding Peaks Export Data
GENOMIC_REGIONS gpDS_867_203_6_3 Yang2011 Data: Stat3 Th17 Export Data
GENOMIC_REGIONS gpDS_867_203_5_3 Yang2011 Data: Stat5a/b Th17 Export Data
gpXP_000276 Further Example NGS Data
  • Expression
N/A
FEATURES gpDS_11_276_12_1 Example Gene Expression Data Export Data
FEATURES gpDS_11_276_13_1 Quantile-Normalized Expression Data Export Data
GENOMIC_REGIONS gpDS_11_276_14_2 Example ChIP-seq Peaks Export Data
SEQUENCES gpDS_11_276_17_1 50,000 PE RNA-seq Reads B Export Data
SEQUENCES gpDS_11_276_3_1 50,000 PE RNA-seq Reads A Export Data
SEQUENCES gpDS_11_276_4_1 100,000 SE ChIP-seq Reads A Export Data
SEQUENCES gpDS_11_276_5_1 100,000 SE ChIP-seq Reads B Export Data
gpXP_000334 Ang2011 Data: Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network
  • Histone Modifications
  • Transcription Factor Binding
SRP002862
  • [Data] Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network. Cell 145 (2011). PubMed:
  • in vitro
  • embryonic stem cell
  • CCE
GENOMIC_REGIONS gpDS_1285_334_20_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_1285_334_22_1 Regulated Genes Export Data
FEATURES gpDS_1285_334_23_1 TFAS Export Data
GENOMIC_REGIONS gpDS_1285_334_16_3 Ang2011 Data: H3K4me3_ChIP Export Data
GENOMIC_REGIONS gpDS_1285_334_11_3 Ang2011 Data: Input DNA Export Data
GENOMIC_REGIONS gpDS_1285_334_12_3 Ang2011 Data: WDR5-FL_ChIP Export Data
GENOMIC_REGIONS gpDS_1285_334_14_3 Ang2011 Data: Rbbp5_ChIP Export Data
GENOMIC_REGIONS gpDS_1285_334_13_3 Ang2011 Data: Wdr5_ChIP Export Data
GENOMIC_REGIONS gpDS_1285_334_15_3 Ang2011 Data: Oct4_ChIP Export Data
gpXP_000346 Lienert2011 Data: Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells
  • Histone Modifications
SRP006002
  • [Data] Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells. PLoS Genet. 7 (2011). PubMed:
  • in vitro
  • embryonic stem cell
  • neuron
GENOMIC_REGIONS gpDS_1285_346_23_1 All ChIP-seq Peaks Export Data
FEATURES gpDS_1285_346_25_1 Putative Target Genes Export Data
FEATURES gpDS_1285_346_26_1 TFAS Export Data
GENOMIC_REGIONS gpDS_1285_346_27_1 MTLs (Merged ChIP-seq Peaks) Export Data
GENOMIC_REGIONS gpDS_1285_346_17_3 Lienert2011 Data: H3K4me2_ES Export Data
GENOMIC_REGIONS gpDS_1285_346_18_3 Lienert2011 Data: TN_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_1285_346_16_3 Lienert2011 Data: TN_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_1285_346_15_3 Lienert2011 Data: H3K27me3_ES Export Data
GENOMIC_REGIONS gpDS_1285_346_14_3 Lienert2011 Data: ES_input Export Data
gpXP_000385 Festuccia et al. (2012), Esrrb Is a Direct Nanog Target Gene that Can Substitute for Nanog Function in Pluripotent Cells
  • Expression
N/A
  • [Data] Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133 (2008). PubMed:
  • [Data] Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 134 (2008). PubMed:
  • [Data] Nanog safeguards pluripotency and mediates germline development. Nature 450 (2007). PubMed:
  • [Data] An atlas of combinatorial transcriptional regulation in mouse and man. Cell 140 (2010). PubMed:
  • [Data+Analysis] Esrrb is a direct Nanog target gene that can substitute for Nanog function in pluripotent cells. Cell Stem Cell 11 (2012). PubMed:
  • in vitro
  • embryonic stem cell
  • E14
  • ESdeltaN-NERT
  • ESdeltaN-iNanog/ESdeltaN-iEsrrb
  • RCN(t)
  • RCNbetaH(t)
  • TNG
  • v6.5
FEATURES gpDS_11_385_36_1 Combined Microarray, DeepSAGE and ChIP-seq Data Export Data
GENOMIC_REGIONS gpDS_11_385_39_2 Annotated Regions Export Data
FEATURES gpDS_11_385_44_1 ESdeltaN-NERT Time-Course Candidates Export Data
FEATURES gpDS_11_385_47_1 Top/Bottom 250 Candidate Genes Export Data
GENOMIC_REGIONS gpDS_11_385_14_3 Festuccia2012 Data: RCNbetaH(t)-L Export Data
GENOMIC_REGIONS gpDS_11_385_12_3 Festuccia2012 Data: RCN(t) Export Data
GENOMIC_REGIONS gpDS_11_385_16_3 Festuccia2012 Data: TNG:GFP- Export Data
GENOMIC_REGIONS gpDS_11_385_13_3 Festuccia2012 Data: RCNbetaH(t)-S Export Data
GENOMIC_REGIONS gpDS_11_385_15_3 Festuccia2012 Data: TNG:GFP+ Export Data
gpXP_000426 Mullen2011 Data: Master Transcription Factors Determine Cell-Type-Specific Responses to TGF-beta Signaling
  • Histone Modifications
  • Transcription Factor Binding
SRP003363
  • [Data] Master transcription factors determine cell-type-specific responses to TGF-? signaling. Cell 147 (2011). PubMed:
  • embryonic stem cell
  • myoblast
  • pre-B cell
  • 38B9
  • C2C12
  • bgo3
  • mc1r(20):tetmyod1(14)
  • v6.5
FEATURES gpDS_11_426_69_1 TFAS (Mouse) Export Data
FEATURES gpDS_11_426_70_1 Regulated Features (Mouse) Export Data
GENOMIC_REGIONS gpDS_11_426_70_2 Annotated Peaks (Mouse) Export Data
FEATURES gpDS_11_426_72_1 TFAS (Human) Export Data
FEATURES gpDS_11_426_73_1 Regulated Features (Human) Export Data
GENOMIC_REGIONS gpDS_11_426_73_2 Annotated Peaks (Human) Export Data
GENOMIC_REGIONS gpDS_11_426_87_3 Mullen2011 Data: Smad3_d2_MC1R_tetMYOD1 Export Data
GENOMIC_REGIONS gpDS_11_426_88_3 Mullen2011 Data: Smad3_d2_wMyod1_MC1R_te.. Export Data
GENOMIC_REGIONS gpDS_11_426_42_3 Mullen2011 Data: Smad3_BGO3 Export Data
GENOMIC_REGIONS gpDS_11_426_76_3 Mullen2011 Data: Smad3_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_426_78_3 Mullen2011 Data: Smad2/3_Activin_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_426_54_3 Mullen2011 Data: Spi1_38B9 Export Data
GENOMIC_REGIONS gpDS_11_426_66_3 Mullen2011 Data: Myod1_C2C12 Export Data
GENOMIC_REGIONS gpDS_11_426_43_3 Mullen2011 Data: Pou5f1_BGO3 Export Data
GENOMIC_REGIONS gpDS_11_426_89_3 Mullen2011 Data: Smad3_d5_MC1R_tetMYOD1 Export Data
GENOMIC_REGIONS gpDS_11_426_77_3 Mullen2011 Data: Smad3_Activin_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_426_55_3 Mullen2011 Data: Smad3_38B9 Export Data
GENOMIC_REGIONS gpDS_11_426_91_3 Mullen2011 Data: Smad3_H2_d5_wMyod1_MC1R.. Export Data
GENOMIC_REGIONS gpDS_11_426_90_3 Mullen2011 Data: Smad3_d5_wMyod1_MC1R_te.. Export Data
GENOMIC_REGIONS gpDS_11_426_67_3 Mullen2011 Data: Smad3_C2C12 Export Data
GENOMIC_REGIONS gpDS_11_426_8_3 Mullen2011 Data: H3_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_426_7_3 Mullen2011 Data: H3_v6.5_sb Export Data
GENOMIC_REGIONS gpDS_11_426_9_3 Mullen2011 Data: H3_C2C12 Export Data
GENOMIC_REGIONS gpDS_11_426_10_3 Mullen2011 Data: H3_38B9 Export Data
GENOMIC_REGIONS gpDS_11_426_44_3 Mullen2011 Data: WCE_BGO3 Export Data
GENOMIC_REGIONS gpDS_11_426_56_3 Mullen2011 Data: IgG_38B9 Export Data
GENOMIC_REGIONS gpDS_11_426_68_3 Mullen2011 Data: IgG_C2C12 Export Data
gpXP_000428 Mazzoni2011 Data: Embryonic stem cell based system for the discovery and mapping of developmental transcriptional programs
  • Transcription Factor Binding
SRP007566
  • [Data] Embryonic stem cell-based mapping of developmental transcriptional programs. Nat. Methods 8 (2011). PubMed:
  • motor neuron progenitor
  • Ainv15
GENOMIC_REGIONS gpDS_11_428_17_2 ChIP-seq Peaks: Hoxc9 and Olig2 Export Data
FEATURES gpDS_11_428_19_1 Genes Associated with Hoxc9 and Olig2 Peaks Export Data
FEATURES gpDS_11_428_20_1 TFAS: Hoxc9 and Olig2 Export Data
GENOMIC_REGIONS gpDS_11_428_10_3 Olig2_native_d4 Export Data
GENOMIC_REGIONS gpDS_11_428_11_3 Olig2_v5tag_d4 Export Data
GENOMIC_REGIONS gpDS_11_428_13_3 Hoxc9_flag_d5 Export Data
GENOMIC_REGIONS gpDS_11_428_12_3 Hoxc9_v5tag_d5 Export Data
GENOMIC_REGIONS gpDS_11_428_14_3 Control_v5_d4 Export Data
gpXP_000436 Lien2011 Data: Genome-wide Maps of Histone Modifications Unwind In Vivo Chromatin States of the Hair Follicle Lineage
  • Histone Modifications
SRP007835
  • [Data] Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage. Cell Stem Cell 9 (2011). PubMed:
  • back skin
  • activated hair follicle stem cell
  • hair follicle TA-matrix cell
  • quiescent hair follicle stem cell
FEATURES gpDS_11_436_35_1 Regulated Genes Export Data
GENOMIC_REGIONS gpDS_11_436_35_2 Annotated Peaks Export Data
FEATURES gpDS_11_436_36_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_436_38_3 Lien2011 Data: qHF-SC_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_436_17_3 Lien2011 Data: HF-TAC_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_436_39_3 Lien2011 Data: qHF-SC_H3K79me2 Export Data
GENOMIC_REGIONS gpDS_11_436_16_3 Lien2011 Data: HF-TAC_H3K79me2 Export Data
GENOMIC_REGIONS gpDS_11_436_28_3 Lien2011 Data: aHF-SC_H3K79me2 Export Data
GENOMIC_REGIONS gpDS_11_436_27_3 Lien2011 Data: aHF-SC_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_436_15_3 Lien2011 Data: HF-TAC_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_436_40_3 Lien2011 Data: qHF-SC_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_436_29_3 Lien2011 Data: aHF-SC_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_436_30_3 Lien2011 Data: aHF-SC_input Export Data
GENOMIC_REGIONS gpDS_11_436_18_3 Lien2011 Data: HF-TAC_input Export Data
GENOMIC_REGIONS gpDS_11_436_41_3 Lien2011 Data: qHF-SC_input Export Data
gpXP_000445 Stadler2011 Data: DNA-binding factors shape the mouse methylome at distal regulatory regions
  • Histone Modifications
  • Polymerase Activity
  • Transcription Factor Binding
SRP007352
  • [Data] DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480 (2011). PubMed:
  • embryonic stem cell
GENOMIC_REGIONS gpDS_11_445_37_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_11_445_39_1 Regulated Genes Export Data
FEATURES gpDS_11_445_40_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_445_34_3 Stadler2011 Data: ES_Input Export Data
GENOMIC_REGIONS gpDS_11_445_31_3 Stadler2011 Data: ES_PolII_1 Export Data
GENOMIC_REGIONS gpDS_11_445_32_3 Stadler2011 Data: ES_PolII_2 Export Data
GENOMIC_REGIONS gpDS_11_445_20_3 Stadler2011 Data: ES_CTCF_1 Export Data
GENOMIC_REGIONS gpDS_11_445_21_3 Stadler2011 Data: ES_CTCF_2 Export Data
GENOMIC_REGIONS gpDS_11_445_22_3 Stadler2011 Data: ES_CTCF_3 Export Data
GENOMIC_REGIONS gpDS_11_445_24_3 Stadler2011 Data: ES_TKO_CTCF_2 Export Data
GENOMIC_REGIONS gpDS_11_445_23_3 Stadler2011 Data: ES_TKO_CTCF_1 Export Data
GENOMIC_REGIONS gpDS_11_445_33_3 Stadler2011 Data: NP_H3K4me1 Export Data
GENOMIC_REGIONS gpDS_11_445_30_3 Stadler2011 Data: ES_H3K4me2_2 Export Data
GENOMIC_REGIONS gpDS_11_445_25_3 Stadler2011 Data: ES_H3K27me3_1 Export Data
GENOMIC_REGIONS gpDS_11_445_26_3 Stadler2011 Data: ES_H3K27me3_2 Export Data
GENOMIC_REGIONS gpDS_11_445_27_3 Stadler2011 Data: ES_H3K27me3_3 Export Data
GENOMIC_REGIONS gpDS_11_445_29_3 Stadler2011 Data: ES_H3K4me2_1 Export Data
GENOMIC_REGIONS gpDS_11_445_28_3 Stadler2011 Data: ES_H3K4me1_1 Export Data
gpXP_000446 Laudadio2012 Data: HNF6 ChIP-seq in mouse
  • Transcription Factor Binding
ERP000394
  • [Data] A feedback loop between the liver-enriched transcription factor network and miR-122 controls hepatocyte differentiation. Gastroenterology 142 (2012). PubMed:
  • liver
  • hepatocyte
GENOMIC_REGIONS gpDS_11_446_10_2 Onecut1 Export Data
FEATURES gpDS_11_446_12_1 Regulated Genes Export Data
FEATURES gpDS_11_446_13_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_446_7_3 Laudadio2012 Data: Onecut1 Export Data
gpXP_000480 Kobayashi2012 Data: Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks
  • Expression
DRP000508
  • [Data] Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet. 8 (2012). PubMed:
  • embryonic stem cell
  • oocyte
  • sperm
FEATURES gpDS_11_480_19_1 Gene Expression (Oocyte, Sperm, ESC) Export Data
GENOMIC_REGIONS gpDS_11_480_13_3 Kobayashi2012 Data: Oocyte DNMT3L-KO Export Data
GENOMIC_REGIONS gpDS_11_480_11_3 Kobayashi2012 Data: ESC Export Data
GENOMIC_REGIONS gpDS_11_480_14_3 Kobayashi2012 Data: Oocyte Export Data
GENOMIC_REGIONS gpDS_11_480_12_3 Kobayashi2012 Data: Sperm Export Data
gpXP_000481 Tiwari2011 Data: NF-Y recruits JNK to Chromatin during Stem Cell Differentiation (RNA-Seq)
  • Expression
  • Histone Modifications
  • Polymerase Activity
  • Transcription Factor Binding
SRP004709
  • [Data] A chromatin-modifying function of JNK during stem cell differentiation. Nat. Genet. 44 (2012). PubMed:
  • embryonic stem cell
  • neuron
  • neuronal precursor
GENOMIC_REGIONS gpDS_11_481_102_2 ChIP-seq Peaks: Histones, JNK13, NFYA and PolII Export Data
FEATURES gpDS_11_481_104_1 Genes Associated with ChIP-seq Peaks Export Data
FEATURES gpDS_11_481_105_1 TFAS Export Data
FEATURES gpDS_11_481_69_1 Gene Expression: ESC, NPC and Neurons Export Data
GENOMIC_REGIONS gpDS_11_481_96_3 Tiwari2011 Data: NP_PolII Export Data
GENOMIC_REGIONS gpDS_11_481_83_3 Tiwari2011 Data: TN_PolII Export Data
GENOMIC_REGIONS gpDS_11_481_95_3 Tiwari2011 Data: ES_PolII Export Data
GENOMIC_REGIONS gpDS_11_481_92_3 Tiwari2011 Data: ES_JNK13 Export Data
GENOMIC_REGIONS gpDS_11_481_88_3 Tiwari2011 Data: NP_JNK13 Export Data
GENOMIC_REGIONS gpDS_11_481_85_3 Tiwari2011 Data: TN_JNK13 Export Data
GENOMIC_REGIONS gpDS_11_481_87_3 Tiwari2011 Data: NP_NFYA Export Data
GENOMIC_REGIONS gpDS_11_481_91_3 Tiwari2011 Data: ES_NFYA Export Data
GENOMIC_REGIONS gpDS_11_481_98_3 Tiwari2011 Data: TN_DMSO_JNK13 Export Data
GENOMIC_REGIONS gpDS_11_481_84_3 Tiwari2011 Data: TN_NFYA Export Data
GENOMIC_REGIONS gpDS_11_481_82_3 Tiwari2011 Data: TN_JNKi_JNK13 Export Data
GENOMIC_REGIONS gpDS_11_481_97_3 Tiwari2011 Data: TN_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_11_481_65_3 Tiwari2011 Data: NP Export Data
GENOMIC_REGIONS gpDS_11_481_94_3 Tiwari2011 Data: ES_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_481_90_3 Tiwari2011 Data: NP_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_481_89_3 Tiwari2011 Data: NP_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_11_481_86_3 Tiwari2011 Data: TN_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_481_93_3 Tiwari2011 Data: ES_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_11_481_66_3 Tiwari2011 Data: TN Export Data
GENOMIC_REGIONS gpDS_11_481_64_3 Tiwari2011 Data: ES Export Data
GENOMIC_REGIONS gpDS_11_481_99_3 Tiwari2011 Data: ES_Input Export Data
gpXP_000482 Schuebeler2011 Data: DNA binding factors shape the mouse methylome at distal regulatory regions [strand-specific-RNA-seq]
  • Expression
SRP007827
  • [Data] DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480 (2011). PubMed:
  • embryonic stem cell
  • neural progenitor
FEATURES gpDS_11_482_17_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_11_482_10_3 Schuebeler2011 Data: ESC.2 Export Data
GENOMIC_REGIONS gpDS_11_482_11_3 Schuebeler2011 Data: NPC.1 Export Data
GENOMIC_REGIONS gpDS_11_482_12_3 Schuebeler2011 Data: NPC.2 Export Data
GENOMIC_REGIONS gpDS_11_482_9_3 Schuebeler2011 Data: ESC.1 Export Data
gpXP_000525 Trompouki2011 Data: Genome-wide location analysis of BMP (SMAD1) in mouse erythroid progenitors co-occupted with lineage specific regulators (GATA1, GATA2) (ChIP-seq)
  • Transcription Factor Binding
SRP008785
  • [Data] Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration. Cell 147 (2011). PubMed:
  • peripheral blood
  • erythroid progenitor
GENOMIC_REGIONS gpDS_1285_525_17_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_1285_525_19_1 Regulated Genes Export Data
FEATURES gpDS_1285_525_20_1 TFAS Export Data
GENOMIC_REGIONS gpDS_1285_525_13_3 Trompouki2011: G1E_Gata2_bmp Export Data
GENOMIC_REGIONS gpDS_1285_525_12_3 Trompouki2011: G1E_Smad1_bmp Export Data
GENOMIC_REGIONS gpDS_1285_525_10_3 Trompouki2011: G1ER_Gata1_bmp Export Data
GENOMIC_REGIONS gpDS_1285_525_9_3 Trompouki2011: G1ER_Smad1_bmp Export Data
GENOMIC_REGIONS gpDS_1285_525_11_3 Trompouki2011: G1ER_Input_bio Export Data
GENOMIC_REGIONS gpDS_1285_525_14_3 Trompouki2011: G1E_Input_bmp Export Data
gpXP_000532 Whyte2012 Data: Enhancer decommissioning by LSD1 during embryonic stem cell differentiation (v6.5 data only)
  • Histone Modifications
  • Transcription Factor Binding
SRP005969
  • [Data] Enhancer decommissioning by LSD1 during embryonic stem cell differentiation. Nature 482 (2012). PubMed:
  • in vitro
  • embryonic stem cell
  • v6.5
FEATURES gpDS_11_532_101_1 REST, LSD1, Mi-2b, HDAC1/2 and H3K27ac/K4me1 -associatated Genes Export Data
GENOMIC_REGIONS gpDS_11_532_101_2 ChIP-seq Binding Peaks (REST, LSD1, Mi-2b, HDAC1/2 and H3K27ac/K4me1) Export Data
FEATURES gpDS_11_532_102_1 TFAS: REST, LSD1, Mi-2b, HDAC1/2 and H3K27ac/K4me1 Export Data
GENOMIC_REGIONS gpDS_11_532_59_3 Whyte2012 Data: H3K27ac_v6.5_C646 Export Data
GENOMIC_REGIONS gpDS_11_532_61_3 Whyte2012 Data: H3K27ac_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_532_60_3 Whyte2012 Data: H3K4me1_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_532_58_3 Whyte2012 Data: H3K4me1_v6.5_C646 Export Data
GENOMIC_REGIONS gpDS_11_532_66_3 Whyte2012 Data: HDAC1_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_532_64_3 Whyte2012 Data: LSD1_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_532_65_3 Whyte2012 Data: HDAC2_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_532_67_3 Whyte2012 Data: REST_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_532_63_3 Whyte2012 Data: Mi-2b_v6.5 Export Data
GENOMIC_REGIONS gpDS_11_532_68_3 Whyte2012 Data: WCE_v6.5 Export Data
gpXP_000535 Mikkelsen2007 Data: Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
  • Histone Modifications
  • Polymerase Activity
SRP000415
  • [Data] Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448 (2007). PubMed:
  • [Data] Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA. Nat. Methods 7 (2010). PubMed:
  • embryonic fibroblast
  • embryonic stem cell
  • neural precursor
  • v6.5
FEATURES gpDS_11_535_68_1 Genes associated with Histone Modifications and PolII in ESC, NPC and MEF Export Data
FEATURES gpDS_11_535_81_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_535_72_3 Mikkelsen2007 Data: EF_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_535_48_3 Mikkelsen2007 Data: ESC_hyb_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_535_59_3 Mikkelsen2007 Data: NPC_H3K9me3 Export Data
GENOMIC_REGIONS gpDS_11_535_74_3 Mikkelsen2007 Data: EF_H3K9me3 Export Data
GENOMIC_REGIONS gpDS_11_535_41_3 Mikkelsen2007 Data: ESC_hyb_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_535_49_3 Mikkelsen2007 Data: ESC_hyb_H3K9me3 Export Data
GENOMIC_REGIONS gpDS_11_535_62_3 Mikkelsen2007 Data: NPC_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_535_61_3 Mikkelsen2007 Data: NPC_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_535_60_3 Mikkelsen2007 Data: NPC_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_535_71_3 Mikkelsen2007 Data: EF_H3K4Me3 Export Data
GENOMIC_REGIONS gpDS_11_535_73_3 Mikkelsen2007 Data: EF_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_535_46_3 Mikkelsen2007 Data: ESC_v6.5_H3K9me3 Export Data
GENOMIC_REGIONS gpDS_11_535_42_3 Mikkelsen2007 Data: ESC_v6.5_H4K20me3 Export Data
GENOMIC_REGIONS gpDS_11_535_45_3 Mikkelsen2007 Data: ESC_v6.5_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_535_43_3 Mikkelsen2007 Data: ESC_v6.5_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_535_44_3 Mikkelsen2007 Data: ESC_v6.5_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_535_47_3 Mikkelsen2007 Data: ESC_v6.5_Pol2 Export Data
GENOMIC_REGIONS gpDS_11_535_75_3 Mikkelsen2007 Data: EF_WCE Export Data
GENOMIC_REGIONS gpDS_11_535_50_3 Mikkelsen2007 Data: ESC_v6.5_WCE Export Data
GENOMIC_REGIONS gpDS_11_535_63_3 Mikkelsen2007 Data: NPC_WCE Export Data
gpXP_000559 Creppe2012 Data: MacroH2A1 regulates the balance between self-renewal and differentiation commitment in embryonic and adult stem cells
  • Histone Modifications
SRP010306
  • [Data] MacroH2A1 regulates the balance between self-renewal and differentiation commitment in embryonic and adult stem cells. Mol. Cell. Biol. 32 (2012). PubMed:
  • embryonic stem cell
  • E14
GENOMIC_REGIONS gpDS_1285_559_10_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_1285_559_12_1 Regulated Genes Export Data
FEATURES gpDS_1285_559_13_1 TFAS Export Data
GENOMIC_REGIONS gpDS_1285_559_6_3 Creppe2012 Data: MacroH2A Export Data
GENOMIC_REGIONS gpDS_1285_559_5_3 Creppe2012 Data: IgG Export Data
gpXP_000560 Dowen2012 Data: Transcription-associated Loading and Translocation of Condensin II on Chromosome Arms in Embryonic Stem Cells (flavopiridol ChIP-Seq)
  • Histone Modifications
  • Transcription Factor Binding
SRP007580
  • [Data] Multiple structural maintenance of chromosome complexes at transcriptional regulatory elements. Stem Cell Reports 1 (2013). PubMed:
  • in vitro
  • embryonic stem cell
  • v6.5
FEATURES gpDS_1285_560_23_1 Regulated Genes Export Data
FEATURES gpDS_1285_560_24_1 TFAS Export Data
GENOMIC_REGIONS gpDS_1285_560_34_3 Dowen2012: H3K4me3 Export Data
GENOMIC_REGIONS gpDS_1285_560_33_3 Dowen2012: H3K27me3 Export Data
GENOMIC_REGIONS gpDS_1285_560_13_3 Dowen2012: smc1_mES_flavo Export Data
GENOMIC_REGIONS gpDS_1285_560_14_3 Dowen2012: CAPH2_mES_flavo Export Data
GENOMIC_REGIONS gpDS_1285_560_26_3 Dowen2012: CAPH2_mES rep1 Export Data
GENOMIC_REGIONS gpDS_1285_560_18_3 Dowen2012: smc1_mES_DMSO_flavo Export Data
GENOMIC_REGIONS gpDS_1285_560_17_3 Dowen2012: CAPH2_mES_DMSO_flavo Export Data
GENOMIC_REGIONS gpDS_1285_560_36_3 Dowen2012: WCE_mES Export Data
gpXP_000581 Liu2012 Data: Spt4 is selectively required for transcription of extended trinucleotide repeats
  • Expression
SRP009272
  • [Data] Spt4 is selectively required for transcription of extended trinucleotide repeats. Cell 148 (2012). PubMed:
  • striatal neural cell
  • yeast cell
FEATURES gpDS_11_581_25_1 Expression + DESeq (Yeast) Export Data
FEATURES gpDS_11_581_36_1 Expression + DESeq (Rat) Export Data
FEATURES gpDS_11_581_46_1 Expression + DESeq (Mouse) Export Data
GENOMIC_REGIONS gpDS_11_581_19_3 Liu2012 Data: Yeast_Spt4-KO.1 Export Data
GENOMIC_REGIONS gpDS_11_581_40_3 Liu2012 Data: Mouse_si-Ctr Export Data
GENOMIC_REGIONS gpDS_11_581_41_3 Liu2012 Data: Mouse_si-Supth4 Export Data
GENOMIC_REGIONS gpDS_11_581_30_3 Liu2012 Data: Rat_si-Ctr Export Data
GENOMIC_REGIONS gpDS_11_581_18_3 Liu2012 Data: Yeast_WT.2 Export Data
GENOMIC_REGIONS gpDS_11_581_17_3 Liu2012 Data: Yeast_WT.1 Export Data
GENOMIC_REGIONS gpDS_11_581_20_3 Liu2012 Data: Yeast_Spt4-KO.2 Export Data
GENOMIC_REGIONS gpDS_11_581_31_3 Liu2012 Data: Rat_si-Supth4 Export Data
gpXP_000613 Zhong2012 Data: Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells
  • Expression
  • Histone Modifications
  • Transcription Factor Binding
SRP011077
  • differentiating embryonic stem cell
  • embryonic stem cell
  • induced pluripotent cell
  • E14
  • H1
GENOMIC_REGIONS gpDS_11_613_124_2 ChIP-seq Peaks (Mouse) Export Data
FEATURES gpDS_11_613_126_1 Regulated Genes (Mouse) Export Data
FEATURES gpDS_11_613_127_1 TFAS (Mouse) Export Data
FEATURES gpDS_11_613_137_1 Expression + DEseq (Mouse) Export Data
FEATURES gpDS_11_613_156_1 Regulated Genes (Pig) Export Data
FEATURES gpDS_11_613_157_1 TFAS (Pig) Export Data
FEATURES gpDS_11_613_162_1 Expression (Pig) Export Data
GENOMIC_REGIONS gpDS_11_613_169_2 H1_H2AZ Export Data
FEATURES gpDS_11_613_171_1 Regulated Genes (Human) Export Data
FEATURES gpDS_11_613_172_1 TFAS (Human) Export Data
GENOMIC_REGIONS gpDS_11_613_116_3 E14_Act-d4_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_613_166_3 Zhong2012 Data: H1_H2AZ Export Data
GENOMIC_REGIONS gpDS_11_613_120_3 E14_Act-d6_H3K9me3 Export Data
GENOMIC_REGIONS gpDS_11_613_96_3 E14_Act-d6_H3K4me1 Export Data
GENOMIC_REGIONS gpDS_11_613_148_3 Zhong2012 Data: pig-iPSC_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_613_104_3 E14_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_613_173_3 Zhong2012 Data: pig-iPSC_H3K4me1 Export Data
GENOMIC_REGIONS gpDS_11_613_113_3 E14_Act-d4_H2AZ Export Data
GENOMIC_REGIONS gpDS_11_613_111_3 E14_H3K4me1 Export Data
GENOMIC_REGIONS gpDS_11_613_100_3 E14_Act-d4_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_11_613_109_3 E14_H2AZ Export Data
GENOMIC_REGIONS gpDS_11_613_101_3 E14_Act-d4_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_613_114_3 E14_Act-d4_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_613_150_3 Zhong2012 Data: pig-iPSC_H2AZ Export Data
GENOMIC_REGIONS gpDS_11_613_117_3 E14_Act-d6_H3K27ac Export Data
GENOMIC_REGIONS gpDS_11_613_119_3 E14_Act-d6_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_11_613_146_3 Zhong2012 Data: pig-iPSC_H3K9me3 Export Data
GENOMIC_REGIONS gpDS_11_613_98_3 E14_Act-d6_H2AZ Export Data
GENOMIC_REGIONS gpDS_11_613_143_3 Zhong2012 Data: pig-iPSC_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_613_112_3 E14_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_613_149_3 Zhong2012 Data: pig-iPSC_H3K27ac Export Data
GENOMIC_REGIONS gpDS_11_613_105_3 E14_H3K27ac Export Data
GENOMIC_REGIONS gpDS_11_613_95_3 E14_Act-d6_H3K4me3 Export Data
GENOMIC_REGIONS gpDS_11_613_97_3 E14_Act-d6_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_613_115_3 E14_Act-d4_H3K4me1 Export Data
GENOMIC_REGIONS gpDS_11_613_102_3 E14_Act-d4_H3K27ac Export Data
GENOMIC_REGIONS gpDS_11_613_110_3 E14_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_613_151_3 Zhong2012 Data: pig-iPSC_H3K27me3 Export Data
GENOMIC_REGIONS gpDS_11_613_147_3 Zhong2012 Data: pig-iPSC_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_11_613_99_3 E14_Act-d4_H3K9me3 Export Data
GENOMIC_REGIONS gpDS_11_613_118_3 E14_Act-d6_H3K36me3 Export Data
GENOMIC_REGIONS gpDS_11_613_103_3 E14_H3K4me2 Export Data
GENOMIC_REGIONS gpDS_11_613_132_3 E14_Act-d6_RNA-seq Export Data
GENOMIC_REGIONS gpDS_11_613_159_3 Zhong2012 Data: pig-iPSC_RNA-seq Export Data
GENOMIC_REGIONS gpDS_11_613_130_3 E14_RNA-seq Export Data
GENOMIC_REGIONS gpDS_11_613_131_3 E14_Act-d4_RNA-seq Export Data
GENOMIC_REGIONS gpDS_11_613_121_3 E14_IgG Export Data
GENOMIC_REGIONS gpDS_11_613_174_3 Zhong2012 Data: pig-iPSC_IgG Export Data
GENOMIC_REGIONS gpDS_11_613_140_3 Zhong2012 Data: pig-iPSC_Taf1 Export Data
GENOMIC_REGIONS gpDS_11_613_139_3 Zhong2012 Data: pig-iPSC_Pou5f1 Export Data
GENOMIC_REGIONS gpDS_11_613_144_3 Zhong2012 Data: pig-iPSC_Nanog Export Data
GENOMIC_REGIONS gpDS_11_613_145_3 Zhong2012 Data: pig-iPSC_Ep300 Export Data
GENOMIC_REGIONS gpDS_11_613_107_3 E14_Taf1 Export Data
gpXP_000640 Nishiyama2009 Data: Uncovering Early Response of Gene Regulatory Networks in ESCs by Systematic Induction of Transcription Factors
  • Transcription Factor Binding
SRP001367
  • [Data] Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors. Cell Stem Cell 5 (2009). PubMed:
  • in vitro
  • embryonic stem cell
GENOMIC_REGIONS gpDS_11_640_6_2 Cdx2 Peaks Export Data
FEATURES gpDS_11_640_8_1 Cdx2 Target Genes (ES) Export Data
FEATURES gpDS_11_640_9_1 Cdx2-TFAS Export Data
GENOMIC_REGIONS gpDS_11_640_3_3 Nishiyama2009 Data: Cdx2 Export Data
gpXP_000643 Verzi2011 Data: Cdx2 transcription factor binding in intestinal villus and gene expression profiling in Cdx mutant mice
  • Transcription Factor Binding
SRP003791
  • [Data] Essential and redundant functions of caudal family proteins in activating adult intestinal genes. Mol. Cell. Biol. 31 (2011). PubMed:
  • intestinal villus
  • intestinal villus cell
FEATURES gpDS_11_643_11_1 Regulated Genes Export Data
FEATURES gpDS_11_643_12_1 TFAS Export Data
GENOMIC_REGIONS gpDS_11_643_9_2 Cdx2 Export Data
GENOMIC_REGIONS gpDS_11_643_6_3 Verzi2011 Data: Control Export Data
GENOMIC_REGIONS gpDS_11_643_5_3 Verzi2011 Data: Cdx2 Export Data
gpXP_000649 Han2010 Data: Genome-wide maps of Tbx3 binding sites in mouse ESCs
  • Transcription Factor Binding
SRP001585
  • [Data] Tbx3 improves the germ-line competency of induced pluripotent stem cells. Nature 463 (2010). PubMed:
  • in vitro
  • embryonic stem cell
FEATURES gpDS_11_649_11_1 Tbx3 Target Genes Export Data
FEATURES gpDS_11_649_12_1 Tbx3-TFAS Export Data
GENOMIC_REGIONS gpDS_11_649_9_2 ESC_Tbx3 Export Data
GENOMIC_REGIONS gpDS_11_649_6_3 Han2010 Data: ESC_InputDNA Export Data
GENOMIC_REGIONS gpDS_11_649_5_3 Han2010 Data: ESC_Tbx3 Export Data
gpXP_000661 Kirigin2012 Data: RNA mapping of Drosha deficient cells
  • Expression
  • Histone Modifications
SRP007488
  • [Data] Dynamic microRNA gene transcription and processing during T cell development. J. Immunol. 188 (2012). PubMed:
  • thymus
  • CD4+ T cell
  • CD8+ T cell
FEATURES gpDS_1285_661_17_1 Gene Expression with Differential Expression Statistics Export Data
GENOMIC_REGIONS gpDS_1285_661_10_3 Kirigin2012 Data: KO CD4 Export Data
GENOMIC_REGIONS gpDS_1285_661_12_3 Kirigin2012 Data: KO CD8 Export Data
GENOMIC_REGIONS gpDS_1285_661_11_3 Kirigin2012 Data: WT CD8 Export Data
GENOMIC_REGIONS gpDS_1285_661_9_3 Kirigin2012 Data: WT CD4 Export Data
gpXP_000684 Park2011 Data: Dicer recognizes the 5' end of RNA for efficient and accurate processing.
  • Expression
SRP007208
  • [Data] Dicer recognizes the 5' end of RNA for efficient and accurate processing. Nature 475 (2011). PubMed:
  • in vitro
  • embryonic stem cell
  • R1
FEATURES gpDS_11_684_20_1 Short RNA Expression + DEseq Export Data
GENOMIC_REGIONS gpDS_11_684_13_3 Park2011 Data: Dicer-KO-5pocket-rescue.1 Export Data
GENOMIC_REGIONS gpDS_11_684_12_3 Park2011 Data: Dicer-KO-WT-rescue.2 Export Data
GENOMIC_REGIONS gpDS_11_684_11_3 Park2011 Data: Dicer-KO-WT-rescue.1 Export Data
GENOMIC_REGIONS gpDS_11_684_15_3 Park2011 Data: ESC_siGFP Export Data
GENOMIC_REGIONS gpDS_11_684_14_3 Park2011 Data: Dicer-KO-5pocket-rescue.2 Export Data
gpXP_000685 Quenneville2011 Data: RNA-seq and expression profile of WT and ZFP57 KO ES cells
  • Expression
  • Transcription Factor Binding
SRP007650
  • [Data] In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions. Mol. Cell 44 (2011). PubMed:
  • in vitro
  • embryonic stem cell
FEATURES gpDS_11_685_11_1 Gene Expression + DEseq Export Data
FEATURES gpDS_11_685_22_1 Integrated RNA-seq and ChIP-seq Data Export Data
GENOMIC_REGIONS gpDS_11_685_23_2 DNA-Protein Binding Peaks Export Data
FEATURES gpDS_11_685_25_1 Zfp57 and Trim28 Target Genes (ChIP-seq) Export Data
FEATURES gpDS_11_685_26_1 Zfp57- and Trim28-TFAS (ChIP-seq) Export Data
GENOMIC_REGIONS gpDS_11_685_5_3 Quenneville2011 Data: WT Export Data
GENOMIC_REGIONS gpDS_11_685_6_3 Quenneville2011 Data: Zfp57-KO Export Data
GENOMIC_REGIONS gpDS_11_685_18_3 Quenneville2011 Data: ES_ChIP_HA-Zfp57 Export Data
GENOMIC_REGIONS gpDS_11_685_19_3 Quenneville2011 Data: ES_ChIP_Kap1 Export Data
GENOMIC_REGIONS gpDS_11_685_20_3 Quenneville2011 Data: ES_ChIP_HA-Control Export Data
gpXP_000687 Liu2011 Data: Control of Embryonic Stem Cell Lineage Commitment by Core Promoter Factor, TAF3
  • Expression
  • Polymerase Activity
  • Transcription Factor Binding
SRP007833
  • [Data] Control of embryonic stem cell lineage commitment by core promoter factor, TAF3. Cell 146 (2011). PubMed:
  • in vitro
  • embryoid body
  • embryonic stem cell
GENOMIC_REGIONS gpDS_11_687_55_1 ChIP-seq Peaks Export Data
FEATURES gpDS_11_687_64_1 TFAS: Pol2, TBP, Taf1, Taf3 Export Data
FEATURES gpDS_11_687_65_1