Ensembl 58 Mouse Genes, NCBIM37 Assembly - Smg5 (Record #25737)

Dataset: Ensembl 58 Mouse Genes, NCBIM37 Assembly (gpDS_pub_mm_ens58_ncbim37)

Feature 'Smg5'

Permalink: http://www.geneprof.org/GeneProf/show?id=gpFT_pub_mm_ens58_ncbim37_25737
Name(s): Smg5
Description: Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) Gene [Source:MGI Symbol;Acc:MGI:2447364]
Feature Type: protein_coding

Genomic Location

Chromosome / Reference Scaffold: 3 (#3) Strand: +
Start: 88,140,182 End: 88,166,259
Length: 26,077bp
Intervals / Exons:
  1. 88,140,182 - 88,140,419 (length = 237bp)
  2. 88,145,780 - 88,145,878 (length = 98bp)
  3. 88,146,363 - 88,146,486 (length = 123bp)
  4. 88,146,802 - 88,146,958 (length = 156bp)
  5. 88,149,285 - 88,149,374 (length = 89bp)
  6. 88,150,367 - 88,150,456 (length = 89bp)
  7. 88,151,440 - 88,151,518 (length = 78bp)
  8. 88,153,064 - 88,153,189 (length = 125bp)
  9. 88,153,298 - 88,153,366 (length = 68bp)
  10. 88,153,938 - 88,154,146 (length = 208bp)
  11. 88,154,619 - 88,154,756 (length = 137bp)
  12. 88,154,901 - 88,155,503 (length = 602bp)
  13. 88,156,885 - 88,157,060 (length = 175bp)
  14. 88,157,798 - 88,157,873 (length = 75bp)
  15. 88,158,454 - 88,158,629 (length = 175bp)
  16. 88,159,500 - 88,159,658 (length = 158bp)
  17. 88,162,575 - 88,162,634 (length = 59bp)
  18. 88,162,949 - 88,163,108 (length = 159bp)
  19. 88,163,470 - 88,163,560 (length = 90bp)
  20. 88,164,253 - 88,164,327 (length = 74bp)
  21. 88,164,676 - 88,164,814 (length = 138bp)
  22. 88,164,947 - 88,166,259 (length = 1,312bp)
Transcript Variants:
Accession Exons Transcript Length
ENSMUST00000001451 88,140,182 - 88,140,419, 88,145,780 - 88,145,878, 88,146,363 - 88,146,486, 88,146,802 - 88,146,958, 88,149,285 - 88,149,374, 88,150,367 - 88,150,456, 88,151,440 - 88,151,518, 88,153,064 - 88,153,189, 88,153,298 - 88,153,366, 88,153,938 - 88,154,146, 88,154,619 - 88,154,756, 88,154,901 - 88,155,503, 88,156,885 - 88,157,060, 88,157,798 - 88,157,873, 88,158,454 - 88,158,629, 88,159,500 - 88,159,658, 88,162,575 - 88,162,634, 88,162,949 - 88,163,108, 88,163,470 - 88,163,560, 88,164,253 - 88,164,327, 88,164,676 - 88,164,814, 88,164,947 - 88,166,259 4,447bp

Smg5 locus

Functional Annotation (from Gene Ontology)

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Protein Interactions (from BioGRID)

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External Database Identifiers and Accession Numbers

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Additional Information about this Gene in Other Databases

TypeValue(s) TypeValue(s)
Affymetrix 430_2 Probe ID1434546_atAffymetrix 430A Probe ID1434546_at
Affymetrix 430A_2 Probe ID1434546_atAgilent Probe ID
A_51_P365399
A_52_P81928
Ensembl Gene IDENSMUSG00000001415Entrez ID229512
Fantom ID
72292
88783
Illumina WG v1 Probe ID
ILMN_2525195
ILMN_1232896
Illumina WG v2 Probe ID
ILMN_2877909
ILMN_1232896
ILMN_2531708
IPI IDIPI00677945
MGI IDMGI:2447364UniProt/SwissProt ID
Illumina WG v2 Probe IDAffymetrix mg u74a v2 Probe ID97992_atAffymetrix mg u74a Probe ID97992_at
RefSeq IDNM_178246UCSC IDuc008put.1
UniGene IDMm.439830

Public GeneProf Data for this Feature

Expression

DNA-Binding Activity

Transcription Factors / Proteins Binding near this Feature