Ensembl 58 Mouse Genes, NCBIM37 Assembly - Tcf3 (Record #13847)

Dataset:

Ensembl 58 Mouse Genes, NCBIM37 Assembly (gpDS_pub_mm_ens58_ncbim37)

Search for a Gene

Feature 'Tcf3'

Permalink:	http://www.geneprof.org/GeneProf/show?id=gpFT_pub_mm_ens58_ncbim37_13847
Name(s):	Tcf3
Description:	transcription factor 3 Gene [Source:MGI (curated);Acc:MGI:98510]
Feature Type:	protein_coding

Protein Structure (from PDB)

Genomic Location

Chromosome / Reference Scaffold:

10 (#10)

Strand:

Start:

79,872,259

End:

79,896,392

Length:

24,133bp

Intervals / Exons:

79,872,259 - 79,873,019 (length = 760bp)
79,873,143 - 79,873,369 (length = 226bp)
79,875,372 - 79,875,807 (length = 435bp)
79,875,950 - 79,876,082 (length = 132bp)
79,877,907 - 79,878,033 (length = 126bp)
79,878,110 - 79,878,268 (length = 158bp)
79,878,598 - 79,879,033 (length = 435bp)
79,879,305 - 79,879,383 (length = 78bp)
79,879,476 - 79,879,534 (length = 58bp)
79,879,835 - 79,879,970 (length = 135bp)
79,880,058 - 79,880,215 (length = 157bp)
79,880,283 - 79,880,385 (length = 102bp)
79,881,511 - 79,881,563 (length = 52bp)
79,882,212 - 79,882,344 (length = 132bp)
79,882,766 - 79,882,833 (length = 67bp)
79,883,833 - 79,883,911 (length = 78bp)
79,884,077 - 79,884,150 (length = 73bp)
79,884,335 - 79,884,605 (length = 270bp)
79,890,416 - 79,890,488 (length = 72bp)
79,893,682 - 79,893,827 (length = 145bp)
79,896,065 - 79,896,392 (length = 327bp)

Transcript Variants:

Accession	Exons	Transcript Length
ENSMUST00000156244	79,882,828 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,884,335 - 79,884,605	430bp
ENSMUST00000156990	79,872,799 - 79,873,019, 79,873,143 - 79,873,369, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,525, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,563, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,730	1,993bp
ENSMUST00000129027	79,875,372 - 79,875,807, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,232	819bp
ENSMUST00000020379	79,872,371 - 79,873,019, 79,873,143 - 79,873,369, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,268, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,560, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,380	2,829bp
ENSMUST00000020377	79,872,353 - 79,873,019, 79,875,572 - 79,875,807, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,563, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,366	2,842bp
ENSMUST00000105339	79,872,799 - 79,873,019, 79,875,572 - 79,875,807, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,525, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,560, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,827	2,096bp
ENSMUST00000105344	79,872,259 - 79,873,019, 79,873,143 - 79,873,369, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,268, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,563, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,382	2,946bp
ENSMUST00000105345	79,872,259 - 79,873,019, 79,873,143 - 79,873,369, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,560, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,392	2,950bp
ENSMUST00000105342	79,872,292 - 79,873,019, 79,875,572 - 79,875,807, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,268, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,563, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,388	2,928bp
ENSMUST00000105343	79,872,292 - 79,873,019, 79,873,143 - 79,873,369, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,563, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,392	2,920bp
ENSMUST00000105346	79,872,353 - 79,873,019, 79,875,572 - 79,875,807, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,560, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,366	2,839bp
ENSMUST00000105340	79,872,371 - 79,873,019, 79,873,143 - 79,873,366, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,268, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,534, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,560, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,813, 79,896,065 - 79,896,380	2,826bp
ENSMUST00000105341	79,872,365 - 79,873,019, 79,873,143 - 79,873,369, 79,875,950 - 79,876,082, 79,877,907 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,878,671, 79,879,305 - 79,879,383, 79,879,476 - 79,879,525, 79,879,835 - 79,879,970, 79,880,058 - 79,880,215, 79,880,283 - 79,880,385, 79,881,511 - 79,881,560, 79,882,212 - 79,882,344, 79,882,766 - 79,882,833, 79,883,833 - 79,883,911, 79,884,077 - 79,884,150, 79,890,416 - 79,890,488, 79,893,682 - 79,893,757	2,451bp
ENSMUST00000127931	79,877,988 - 79,878,033, 79,878,110 - 79,878,265, 79,878,598 - 79,879,033	638bp

Tcf3 locus

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Functional Annotation (from Gene Ontology)

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Protein Interactions (from BioGRID)

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External Database Identifiers and Accession Numbers

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Additional Information about this Gene in Other Databases

Ensembl

iHOP

Uniprot

StemDB

Type	Value(s)	Value(s)
Affymetrix 430_2 Probe ID	1452542_x_at 1426297_at 1427764_a_at	Affymetrix 430A Probe ID	1452542_x_at 1426297_at 1427764_a_at
Affymetrix 430A_2 Probe ID	1452542_x_at 1426297_at 1427764_a_at	Agilent Probe ID	A_51_P394471 A_52_P141662
Ensembl Gene ID	ENSMUSG00000020167	Entrez ID	21423
Fantom ID	90937 35220 6938 17095	Illumina WG v1 Probe ID	ILMN_2596278 ILMN_2733394
Illumina WG v2 Probe ID	ILMN_2596278 ILMN_2596277	IPI ID	IPI00122714 IPI00461050 IPI00830513 IPI00830409 IPI00830417 IPI00830311 IPI00830212 IPI00831690 IPI00831609 IPI00831504 IPI00831232 IPI00831144
MGI ID	MGI:98510	UniProt/SwissProt ID	Q80Z31 P15806 Q9CRT1
Illumina WG v2 Probe IDAffymetrix mg u74a v2 Probe ID	98040_at	Affymetrix mg u74a Probe ID	98040_at
RefSeq ID	NM_011548 NM_001164151 NM_001164152 NM_001164153 NM_001164150 NM_001164147 NM_001164148 NM_001164149	UCSC ID	uc007gdi.1 uc007gdg.1 uc007gdh.1 uc007gdk.1 uc007gdm.1 uc007gdf.1
UniGene ID	Mm.3406

Ensembl 58 Mouse Genes, NCBIM37 Assembly - Tcf3 (Record #13847)

Feature 'Tcf3'

Protein Structure (from PDB)

Genomic Location

Tcf3 locus

Functional Annotation (from Gene Ontology)

Protein Interactions (from BioGRID)

External Database Identifiers and Accession Numbers

Additional Information about this Gene in Other Databases

Public GeneProf Data for this Feature

Experiments Specifically Dealing with this Feature

Expression

DNA-Binding Activity

Transcription Factors / Proteins Binding near this Feature