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Ensembl 58 Mouse Genes, NCBIM37 Assembly - Ctr9 (Record #4533)

Dataset: Ensembl 58 Mouse Genes, NCBIM37 Assembly (gpDS_pub_mm_ens58_ncbim37)

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Feature 'Ctr9'

Permalink: http://www.geneprof.org/GeneProf/show?id=gpFT_pub_mm_ens58_ncbim37_4533
Name(s): Ctr9
Description: Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Gene [Source:MGI (curated);Acc:MGI:109345]
Feature Type: protein_coding

Genomic Location

Chromosome / Reference Scaffold: 7 (#7) Strand: +
Start: 118,172,465 End: 118,199,891
Length: 27,426bp
Intervals / Exons:
  1. 118,172,465 - 118,172,695 (length = 230bp)
  2. 118,173,728 - 118,174,323 (length = 595bp)
  3. 118,177,205 - 118,177,979 (length = 774bp)
  4. 118,178,802 - 118,178,906 (length = 104bp)
  5. 118,181,900 - 118,182,048 (length = 148bp)
  6. 118,184,069 - 118,184,176 (length = 107bp)
  7. 118,186,330 - 118,186,437 (length = 107bp)
  8. 118,186,540 - 118,186,776 (length = 236bp)
  9. 118,186,931 - 118,187,020 (length = 89bp)
  10. 118,187,128 - 118,187,256 (length = 128bp)
  11. 118,187,350 - 118,187,533 (length = 183bp)
  12. 118,188,891 - 118,188,979 (length = 88bp)
  13. 118,189,768 - 118,189,953 (length = 185bp)
  14. 118,190,030 - 118,191,493 (length = 1,463bp)
  15. 118,192,778 - 118,192,894 (length = 116bp)
  16. 118,193,024 - 118,193,169 (length = 145bp)
  17. 118,193,948 - 118,194,020 (length = 72bp)
  18. 118,194,459 - 118,194,594 (length = 135bp)
  19. 118,194,964 - 118,195,110 (length = 146bp)
  20. 118,195,728 - 118,195,973 (length = 245bp)
  21. 118,196,896 - 118,196,992 (length = 96bp)
  22. 118,197,328 - 118,197,440 (length = 112bp)
  23. 118,198,873 - 118,199,891 (length = 1,018bp)
Transcript Variants:
Accession Exons Transcript Length
ENSMUST00000143818 118,173,729 - 118,173,826, 118,177,205 - 118,177,570 464bp
ENSMUST00000005749 118,172,465 - 118,172,695, 118,173,728 - 118,173,826, 118,177,205 - 118,177,444, 118,177,862 - 118,177,979, 118,178,802 - 118,178,891, 118,181,900 - 118,182,048, 118,184,069 - 118,184,176, 118,186,330 - 118,186,437, 118,186,540 - 118,186,776, 118,186,931 - 118,187,020, 118,187,128 - 118,187,256, 118,187,350 - 118,187,533, 118,188,891 - 118,188,979, 118,189,768 - 118,189,953, 118,190,030 - 118,190,117, 118,190,277 - 118,190,425, 118,192,778 - 118,192,894, 118,193,024 - 118,193,169, 118,193,948 - 118,194,019, 118,194,459 - 118,194,594, 118,194,964 - 118,195,110, 118,195,816 - 118,195,973, 118,196,896 - 118,196,992, 118,197,328 - 118,197,440, 118,198,873 - 118,199,891 4,300bp
ENSMUST00000140220 118,177,550 - 118,177,979, 118,178,802 - 118,178,906 535bp
ENSMUST00000152019 118,172,509 - 118,172,695, 118,173,728 - 118,173,826, 118,177,205 - 118,177,444, 118,177,862 - 118,177,979, 118,178,802 - 118,178,891, 118,181,900 - 118,182,048, 118,184,069 - 118,184,176, 118,186,330 - 118,186,437, 118,186,540 - 118,186,776, 118,186,931 - 118,187,020, 118,187,128 - 118,187,256, 118,187,350 - 118,187,533, 118,188,891 - 118,188,979, 118,189,768 - 118,189,953, 118,190,030 - 118,190,117, 118,190,277 - 118,191,161 2,987bp
ENSMUST00000157025 118,189,824 - 118,189,953, 118,190,030 - 118,191,493 1,594bp
ENSMUST00000098103 118,172,535 - 118,172,695, 118,173,728 - 118,173,826, 118,177,205 - 118,177,444, 118,177,862 - 118,177,979, 118,178,802 - 118,178,891, 118,181,900 - 118,182,048, 118,184,069 - 118,184,176, 118,186,330 - 118,186,437, 118,186,540 - 118,186,776, 118,186,931 - 118,187,020, 118,187,128 - 118,187,256, 118,187,350 - 118,187,533, 118,188,891 - 118,188,979, 118,189,768 - 118,189,953, 118,190,030 - 118,190,117, 118,190,277 - 118,190,425, 118,192,778 - 118,192,894, 118,193,024 - 118,193,169, 118,193,948 - 118,194,020, 118,194,964 - 118,195,110, 118,195,816 - 118,195,973, 118,196,896 - 118,196,992, 118,198,874 - 118,199,299 3,389bp
ENSMUST00000146558 118,189,824 - 118,189,953, 118,190,030 - 118,190,336 437bp
ENSMUST00000146709 118,172,527 - 118,172,695, 118,173,728 - 118,174,323 765bp
ENSMUST00000123681 118,194,507 - 118,194,594, 118,194,964 - 118,195,110, 118,195,728 - 118,195,884 392bp

Ctr9 locus

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Functional Annotation (from Gene Ontology)

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Protein Interactions (from BioGRID)

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External Database Identifiers and Accession Numbers

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Additional Information about this Gene in Other Databases

Ensembl

iHOP

Uniprot

StemDB
TypeValue(s) TypeValue(s)
Affymetrix 430_2 Probe ID
1422680_at
1422681_at
1422679_s_at
1442240_at
1448076_at
Affymetrix 430A Probe ID
1422680_at
1422681_at
1422679_s_at
1448076_at
Affymetrix 430A_2 Probe ID
1422680_at
1422681_at
1422679_s_at
1448076_at
Affymetrix 430B Probe ID1442240_at
Agilent Probe IDA_51_P370163Ensembl Gene IDENSMUSG00000005609
Entrez ID22083Fantom ID
92766
92438
56588
41131
36667
45525
Illumina WG v1 Probe IDILMN_1246471Illumina WG v2 Probe IDILMN_1246471
IPI IDMGI IDMGI:109345
UniProt/SwissProt IDIllumina WG v2 Probe IDAffymetrix mg u74a v2 Probe ID
100460_at
95962_at
Affymetrix mg u74a Probe ID
100460_at
95962_at
RefSeq IDNM_009431
UCSC IDuc009jfx.1

Public GeneProf Data for this Feature

Experiments Specifically Dealing with this Feature

Expression

DNA-Binding Activity

Transcription Factors / Proteins Binding near this Feature